Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1504 ATGTGGACATTTTGTGCTATAGTTCTTTGTTTGTATGATCCCAAGGTTTTGTTCTCTTTTTATCTCCATAACAGCATCACCATACTTTTCTTTGCAAAAGAAGGTGAAGGTTGCATCCTTACACCAATGAAGGAAAACACTCTTCCACCTGTGACTGTAAATTTCCAGCAAGGTCTTGGACAGAAGTTTAAACAACCAGCGGGAACAGGTATCGATTTTTCAGTATTTGAGGAGTCTGATTTGTTCAAAGTCAGTGACATGGATGTATATCCTCTAGCCGTTAAGGCAGATGCATCCTCTCGTGATGGTCATGGATCAAATGAAACTCCAACATCTGGTAAAACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAAGAGAAAGGTGAATTGCGTGTGAAGGTTGTTAAGCAAATCTTGTGGGTGAATGGAATGAGGTATGAGCTGCAAGAGATATATGGTATTGGAAATTCAGTGGAAAGTGACTTGGATGGAAATGACCCTGGGAAAGAGTGTGTTATCTGCTTGTCAGAGCCTCGGGACACAACTGTCCTTCCCTGCCGCCACATGTGCATGTGTAGCGGCTGTGCTAAGGTTTTGAGGTTACAGACAAATAGATGTCCGATCTGCAGACAACCAATTGAGAGGCTTCTAGAGATCAAAGTGGGTCCTGAGCCTGAGGAGTGA 687 0.4279 MWTFCAIVLCLYDPKVLFSFYLHNSITILFFAKEGEGCILTPMKENTLPPVTVNFQQGLGQKFKQPAGTGIDFSVFEESDLFKVSDMDVYPLAVKADASSRDGHGSNETPTSGKTNSQITQAVFEKEKGELRVKVVKQILWVNGMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRLQTNRCPICRQPIERLLEIKVGPEPEE 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1504 228 SMART ring_2 172 210 IPR001841 -
Lal13g1504 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 21 228 - -
Lal13g1504 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 221 IPR013083 -
Lal13g1504 228 MobiDBLite consensus disorder prediction 98 118 - -
Lal13g1504 228 SUPERFAMILY RING/U-box 171 217 - -
Lal13g1504 228 MobiDBLite consensus disorder prediction 103 118 - -
Lal13g1504 228 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 171 211 IPR045195 -
Lal13g1504 228 ProSiteProfiles Zinc finger RING-type profile. 172 211 IPR001841 -
Lal13g1504 228 Pfam Zinc finger, C3HC4 type (RING finger) 170 216 - -
Lal13g1504 228 PANTHER MAHOGUNIN 21 228 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1504 Lal-Chr13 14700999 14706804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1504 18 191 C3H Transcription Factor Family AT3G09770 63.128 7.54e-74 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1504 - - lang:109339313 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1504 13 14700999 14706804 Lal13g1504 13 14700999 14706804 ECH