Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1501 ATGGCGGAAGAAAAGCAACACACTGTGCCGGTTTTGCCATGGATGCGAGACCCTGTTGATGTCACCCTCTTTCAACAACTCCCCCTTGATTCCATTCCTTCCCTCCACCCCAGTTTGAAGTTGGCATTGGAGAACATGGGGATCTCGGATTTCTTCCCTGTGCAACTTGCAGTTTGGCAAGAGACAGTTGGTCCCGGTAATTTTGAGCGAGACCTTTGCATAAATTCACCGACTGGTAGTGGAAAAACTCTAGCATACGCTCTCCCTATAGTCCAGTTGCTATCGAAACGTGTTGTAAAATGCCTTCGTGCTTTAGTCGTGGTGCCCACTCGTGATCTTGCCTTACAGGTTAAACGAGTTTTTGATGCTATTGCATCTCCGTTAGGCTTACATGTTGGCTTGGCTGTTGGTCAATCTTCTGTAGCTGATGAAATTTCGCAGCTTGTCCACATACCAGAAAATGTATTAGGCATGTGTTATGATCCAGAAGATGTTTCGCTTCAGTTCCAACTTGGATTCCAAAGTAAGGTGGATATACTAGTGGCAACCCCTGGGAGGCTGATGGATCACATCAATACTACTAAAGGGTTCACACTTGAGCATCTTCATTATCTTGTGGTTGATGAAACAGATCGACTACTCCGGGAGGCTTACCAGTCCTGGCTACCTACTGTGCTTCAACTGACTGAATCTAATGATGATGATATTTTTCAAGCAGCTGATTCCTTATTTCATTATTCTGTTGGTGCATTAAGAACAAGAAGAAGATGTGGTGTTGAGAGGGGGTTGGCAAAGATGGTTCTTTCTGCAACAATAACCCAGGACCCTGGCAGGCTTGTTCAGCTTAATTTGCATCACCCTTTATTCCTGAAAGCTGGGCAAATGCGTTATCGGCTCCCAGAAAATTTGGAATCTTACAAACTGATATGTGGAATAAAAGTCAAACCGTTGTATCTGGTAGCACTTTTGAAATCCCTCGAAGGAGAAAAATGCATAGTTTTTACCAAATCTGTGGAGGCAGCACATCGTCTCTGCAAATTGATGAAATGTTTTGTAGATCTGAAAATTGATATCAAGGAGTATTCTGGTCTTCAACATCAACGTGTAAGAAGTAAGACATTAAGTGAATTTCGGAAAGGGGCGTTTCAGGTGCTTGTATCCTCTGATGCTATGACTCGTGGAATTGATGTTGAAGGTGTAAGAAGTGTCATTAATTACGACATGCCCAAATACGTAAAGACTTATGTTCATCGAGCTGGTAGGACTGCGAGAGCTGGCCATACTGGGCGTTGCTTTACATTGATATCCGAAGATGAGGTTAGACAATTTAAGAAGTTGATGCGAAAAGCTGAGGCTAGTTCTTGTCCTGAGCACACTGTTCCTTCCAGTTTGATTGAAGCACTTCAACCTACCTACGAATCAGCACTGCAAAAATTTAAGGAGATCTTTGTTGGGACACGAAAGAAAACTAAGGACTAG 1479 0.432 MAEEKQHTVPVLPWMRDPVDVTLFQQLPLDSIPSLHPSLKLALENMGISDFFPVQLAVWQETVGPGNFERDLCINSPTGSGKTLAYALPIVQLLSKRVVKCLRALVVVPTRDLALQVKRVFDAIASPLGLHVGLAVGQSSVADEISQLVHIPENVLGMCYDPEDVSLQFQLGFQSKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLQLTESNDDDIFQAADSLFHYSVGALRTRRRCGVERGLAKMVLSATITQDPGRLVQLNLHHPLFLKAGQMRYRLPENLESYKLICGIKVKPLYLVALLKSLEGEKCIVFTKSVEAAHRLCKLMKCFVDLKIDIKEYSGLQHQRVRSKTLSEFRKGAFQVLVSSDAMTRGIDVEGVRSVINYDMPKYVKTYVHRAGRTARAGHTGRCFTLISEDEVRQFKKLMRKAEASSCPEHTVPSSLIEALQPTYESALQKFKEIFVGTRKKTKD 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1501 492 PANTHER RNA HELICASE 29 476 - -
Lal13g1501 492 CDD SF2_C_DEAD 315 435 - -
Lal13g1501 492 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 468 IPR001650 -
Lal13g1501 492 Pfam Helicase conserved C-terminal domain 315 426 IPR001650 -
Lal13g1501 492 Gene3D - 6 293 IPR027417 -
Lal13g1501 492 Pfam DEAD/DEAH box helicase 53 276 IPR011545 GO:0003676|GO:0005524
Lal13g1501 492 Gene3D - 312 492 IPR027417 -
Lal13g1501 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 447 IPR027417 -
Lal13g1501 492 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 290 IPR014001 -
Lal13g1501 492 SMART ultradead3 47 306 IPR014001 -
Lal13g1501 492 SMART helicmild6 342 426 IPR001650 -
Lal13g1501 492 CDD DEADc_DDX51 39 290 - -
Lal13g1501 492 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 29 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1501 Lal-Chr13 14620420 14635669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1501 57 448 Eukaryotic Initiation Factors Gene Family AT1G72730 23.980 1.26e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1501 K14807 - vvi:100258315 671.389