Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1500 ATGATTGCATTTATGGAATCAAAGGAGAAAGCAAAAAAGGTTGAGAAGTGTTTGGATCCTCAACTATGGCATGCTTGTGCAGGTGGAATGGTGCAGATGCCAGAGTTGAACAGCAAGGTTTATTATTTCCCTCAGGGTCATGCTGAACATGCATGTGGTTCAGTGAATTTCAGTACTTGCCCCAAGGTTCAACCTTTAGTTCTTTGCAGAGTTGAAGCTATCAAATACATGGCTGATCCTGAAACTGATGAGGTATATGTCAAACTAAGGCTTGTTCCTGTAAATAGAAATGATGCTAATTATGGGTTTGATTGTATTGGAGGGGTAAATGGATCTGAGAATCAAGATAAGCCTGCTTCTTTTGCAAAGACCTTAACTCAATCCGATGCGAACAATGGTGGAGGGTTTTCTGTTCCTAGGTATTGTGCTGAGACAATTTTCCCCCGTTTGGACTATTCGGCTGCACCTCCGGTTCAAAACATTCTGGTCAAAGATGTGCACGGCGAGACATGGAAATTGAGGCACATTTATAGGGGCACTCCAAGGCGGCATCTGTTGACTACCGGGTGGAGTAATTTTGTCAATCATAAGAAGCTTGTTGCTGGGGACTCAATTGTGTTTTTGAGAGCGGAAAATGGGGATCTATGCGTTGGAATTCGGAGAGCGAAGAAGGGTATGGTTGGTGGAGCTGAGGCTTCATCAGGGTGGAACCCTGCTGGTGGGAACTCTACTGTGCCTTATGGTGGACTTGCAGCATATTTGAGAGGAGATGATGTGAATAGTCTCATGAGAAATGGTAACAATAGGAATGGTTTGAATTTGAACCCGCCGAGATTGAGTATGATGGGAAATGGAAATGTGATGCCGGAAGCAGTTATTGAAGCTGTTACTCTTGCTGCAAATAAGCAATCTTTTGAGGTTGTGTACTACCCTCGGGCTAGTACTCCGGAATTTTGTGTGAAGGCCTCTTTAATTGAAGCAGCATTGCAGATTAGGTGGTGTTCTGGAATGAGATTCAAGATGCCCTTCGAAACTGAGGACTCCTCGCGGATTAGCTGGTTTATGGGAACCATATCTTCAGTTCAGGTTGCTGATCCCCTTGGCTGGCCTACTTCACCTTGGAGACTTCTCCAGGTTACATGGGATGAACCAGATTTACTTCAAAATGTGAGAAAAGTGAACCCATGGCTAGTTGAATTGGTATCTAACATGCCAGCTTTCCCTCTTTCTCCTTTCTCACCGCCACGGAAGAAATTTAGATTGCCCGAACACCCAGATTTCCCCCTTGATGGCCACATTCCTCCACCAACATTCTCCGGTAATCTTCTAGTTCCCAACAACAACCTATTCAGATATCCACCCGATAATTCTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCGTTATGGTCTATCCTTACCGGATTTCCACCTCAATAGACTGCAGTCAGGTCTAATACCTTTCAGTGTCCCACCTCCTGATCACGCTGCTACACCAATGAGGGTCTCGACAAACCTATCATTACAAAAGCCTGTTACGAGTGAGAATGTATCTTGTTTATTATCTATGGAAAATTCTACTCAATCTACTAGGAAACTGGATGGTGTAAAGACACCATCCCAGCTTGTACTTTTCGGCCAAAAAATTCTCACTGAACAGCAAATCTCTTTGAGTAACTCCGGAGACATGGTCTCCGTTGATCGAAATGGATCTGCTCTCGATCATCATGGCGTAGAAGAACGCTCCTCTTCTGGGAGGTTCCCATGGTGTAAGGATAACCGCCAAGAAACTGAGGCCAGTTTGGAGATTCGTCATTGTAAAGTTTTTATGGAATCGGAAGATGTAGGCCGGACTATGGACCTCTCATTGCTACGATCTTATGATGAACTGTACAGAAATCTGGCAGACATGTTTTGCATAGAAAAGTTTGAGATGCTAAATCATGTGCTCTACCGCGATATAACAGGGGTAGTCAAACAGATTGGAGACGAGCCATTCAGTGACTTCACAAAAACAGTTAGGAGGTTGACTATTGTAATGGATTCCAGCAGTGACAATGTAGGAGTGTAA 2070 0.444 MIAFMESKEKAKKVEKCLDPQLWHACAGGMVQMPELNSKVYYFPQGHAEHACGSVNFSTCPKVQPLVLCRVEAIKYMADPETDEVYVKLRLVPVNRNDANYGFDCIGGVNGSENQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAAPPVQNILVKDVHGETWKLRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGMVGGAEASSGWNPAGGNSTVPYGGLAAYLRGDDVNSLMRNGNNRNGLNLNPPRLSMMGNGNVMPEAVIEAVTLAANKQSFEVVYYPRASTPEFCVKASLIEAALQIRWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPLGWPTSPWRLLQVTWDEPDLLQNVRKVNPWLVELVSNMPAFPLSPFSPPRKKFRLPEHPDFPLDGHIPPPTFSGNLLVPNNNLFRYPPDNSPAGMQGARHARYGLSLPDFHLNRLQSGLIPFSVPPPDHAATPMRVSTNLSLQKPVTSENVSCLLSMENSTQSTRKLDGVKTPSQLVLFGQKILTEQQISLSNSGDMVSVDRNGSALDHHGVEERSSSGRFPWCKDNRQETEASLEIRHCKVFMESEDVGRTMDLSLLRSYDELYRNLADMFCIEKFEMLNHVLYRDITGVVKQIGDEPFSDFTKTVRRLTIVMDSSSDNVGV 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1500 689 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Lal13g1500 689 Gene3D - 600 687 - -
Lal13g1500 689 SUPERFAMILY DNA-binding pseudobarrel domain 116 223 IPR015300 -
Lal13g1500 689 ProSiteProfiles PB1 domain profile. 603 686 IPR000270 GO:0005515
Lal13g1500 689 Pfam Auxin response factor 295 378 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal13g1500 689 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Lal13g1500 689 Gene3D - 332 405 - -
Lal13g1500 689 CDD B3_DNA 120 221 IPR003340 GO:0003677
Lal13g1500 689 Gene3D - 119 223 IPR015300 -
Lal13g1500 689 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 680 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal13g1500 689 PANTHER AUXIN RESPONSE FACTOR 6 680 - -
Lal13g1500 689 SMART B3_2 121 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1500 Lal-Chr13 14608534 14611815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1500 14 689 B3 DNA Binding Superfamily AT4G30080 56.286 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal13g1500 B3 4.7e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1500 13 14608534 14611815 Lal12g0158 12 1119401 1122383 ECH
Lal13g1500 13 14608534 14611815 Lal24g0126 24 899001 902404 ECH
Lal13g1500 13 14608534 14611815 Lal13g1500 13 14608534 14611815 ECH
Lal13g1500 13 14608534 14611815 Lal9g0276 9 1721226 1725148 ECH
Lal13g1500 13 14608534 14611815 Lal8g0149 8 1013683 1017579 ECH
Lal13g1500 13 14608534 14611815 Lal10g1230 10 18631524 18635382 ECH