Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1493 ATGTCTTCCGGTAGATCAAGATCTGTAAGATTTCATGATGATATTGAAATAGACGAGTTAGTCGAATTGGAAAGCAAAGAGAGTGATCAGCTATCAGTGTTGGCCTATAAGATGAATGACAGACAGAAACTTGGGAAGGAAGCAATAGGCAAGTCATCGGTCGGAAGAGAACTTTCCAGGGTCTTTTCTGAGGATTATGATGCTGCAGAGATGTTGGTATTGGATCCTAGGGGGGCTAGAGTGAATAGATGGAACAAAATTTTCTTAGTGGCATGTTTGATTTCATTGTTTGTGGATCCCTTGTTCTTTTACTTACCAGTGGCTAAGAAAGACAAGTGCATTGATATGTCTGTTGGTCTTGGAGTGTCTCTTACCGTGATTCGGTCCATGATTGATGCATTTTACATCATTCAGATTTATGTTCGGTTTCAAACTGCTTACGTTGCTCCTTCCTCTCGTGTTTCGGGTAGAGGAGAGCTTATCATAGATCCCTCCAAGATTGCATCAAACTACCTGCATAAAGACTTCTGGCTTGATTTCGTGGCTGCTCTGCCGCTTCCACAGGTATTGATTTGGGCTGTAATTCCAAATCTAAGGGGGTCACAAATGATTTCATCAAGGCATGTTCTTCGCTTCGTTACCCTTTTCCAGTACCTCTTGAGGTTGTATAGTATTTATCCTTTATCATCTGAAATCGTCAAGGTTAACGGAGTGATGATGGAAAAAGCTTGGGCTGGAGCTGCATATAATCTCACACTTTATATGCTTGCAAGTCATGTATTAGGATCTTCTTGGTACCTGTTATCAATTGAACGACAGGACGAATGTTGGAAGAAAGCTTGTACTCTTCGGTACCCGTACTGCCGGTATCACTATCTTGATTGTCAAAGCATAGGTGATCCAGATAGGTCTGCTTGGTTCAGATCAAGCAATCTCTCAGGTCTATGTGATCAGAACAATGATTTCTTTCAGTTTGGCATTTTTGCTGATGCTCTGATTTTGGAAATTACTGCCTCGAAATTCCTCAACAAGTACTATTACTGTCTATGGTGGGGACTAAAGAATCTCAGCTCTGCAGGGCAAAATCTCTCAACAAGCACACATGTTGCAGAGATAATTTTTGCTGTGATTGTTGCAATTCTTGGGTTGGTGCTTTTTGCATTGCTTATAGGCAATATGCAAACCTACCTTCAATCCACCACTATGAGGCTAGAAGAATGGAGAATAAGAAGGACAGATACCGAAAAATGGATGCATCACAGGCAGCTCCCTCGTTACCTGAAACAAAATGTGCGACGCTATGATCAATTCAAATGGGTTGCTACTCGCGGAGTTGATGAGGAAACTATCCTCAGAGACCTTCCTGTAGATCTTAGACGTGACATTAAACGCCATCTTTGCCTTAATCTTGTTCGACAAGTACCACTATTTGATCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGATTGAAGCCTTCTCTGTGTACTCCGGGCACATGCCTAATTCGGGAAGGCGACCTTGTGAATGAGATGCTCTTCATCATTCGAGGACGCCTAGACTCTTGTACAACCAATGGTGGAAGAACTGGCTTCTTCAACTCATGCCGAATCGGCTCGGGCGAATTCTGTGGTGAAGAGCTATTGCCATGGGCCTTAGACCCTCGTCCAACTGTTGTCCTTCCATCCTCTACTCGGACAGTGAAAGCCATCACTGAAGTGGAAGCATTTGCACTCATTGCAGAGGACTTGATGTTTGTTGCAGCACAATTCAGAAGGCTACATAGTAAACAATTGAGGCACACTTTCAGGTTTCATTCACATCAGTGGAGGGCATGGGCTGCATGTTTTATACAAGCAGCATGGTTTAGGTATAAAAGAATGAAGGAAACAAGTGAGCTTAAGAAAAAGGAAGATGTTATGATGATGGATTATGTGCCTGAATTTGGCACTGAGCATTTCTCTGCACCTTTGCATCACTCAATGGTTTCAATGTATGCAGCAAAACTTGCAGCTAGCCCAAGGAGAGGTAGGAGCTTGAGATATGGGTCTGAACTTGACATTTTTGGTTCATTAAGGAAGCCCCTTGAGCCAGATTTTAATGAATAG 2112 0.4257 MSSGRSRSVRFHDDIEIDELVELESKESDQLSVLAYKMNDRQKLGKEAIGKSSVGRELSRVFSEDYDAAEMLVLDPRGARVNRWNKIFLVACLISLFVDPLFFYLPVAKKDKCIDMSVGLGVSLTVIRSMIDAFYIIQIYVRFQTAYVAPSSRVSGRGELIIDPSKIASNYLHKDFWLDFVAALPLPQVLIWAVIPNLRGSQMISSRHVLRFVTLFQYLLRLYSIYPLSSEIVKVNGVMMEKAWAGAAYNLTLYMLASHVLGSSWYLLSIERQDECWKKACTLRYPYCRYHYLDCQSIGDPDRSAWFRSSNLSGLCDQNNDFFQFGIFADALILEITASKFLNKYYYCLWWGLKNLSSAGQNLSTSTHVAEIIFAVIVAILGLVLFALLIGNMQTYLQSTTMRLEEWRIRRTDTEKWMHHRQLPRYLKQNVRRYDQFKWVATRGVDEETILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLCTPGTCLIREGDLVNEMLFIIRGRLDSCTTNGGRTGFFNSCRIGSGEFCGEELLPWALDPRPTVVLPSSTRTVKAITEVEAFALIAEDLMFVAAQFRRLHSKQLRHTFRFHSHQWRAWAACFIQAAWFRYKRMKETSELKKKEDVMMMDYVPEFGTEHFSAPLHHSMVSMYAAKLAASPRRGRSLRYGSELDIFGSLRKPLEPDFNE 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1493 703 SUPERFAMILY Voltage-gated potassium channels 76 398 - -
Lal13g1493 703 ProSiteProfiles cAMP/cGMP binding motif profile. 476 561 IPR000595 -
Lal13g1493 703 CDD CAP_ED 476 607 IPR000595 -
Lal13g1493 703 SMART cnmp_10 476 607 IPR000595 -
Lal13g1493 703 Gene3D Jelly Rolls 474 594 IPR014710 -
Lal13g1493 703 Gene3D - 87 400 - -
Lal13g1493 703 PANTHER PROTEIN CNGC15A 27 702 - -
Lal13g1493 703 PRINTS EAG/ELK/ERG potassium channel family signature 139 148 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal13g1493 703 PRINTS EAG/ELK/ERG potassium channel family signature 256 266 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal13g1493 703 PRINTS EAG/ELK/ERG potassium channel family signature 345 362 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal13g1493 703 PRINTS EAG/ELK/ERG potassium channel family signature 371 382 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal13g1493 703 PRINTS EAG/ELK/ERG potassium channel family signature 389 398 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal13g1493 703 PRINTS EAG/ELK/ERG potassium channel family signature 439 446 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal13g1493 703 SUPERFAMILY cAMP-binding domain-like 406 598 IPR018490 -
Lal13g1493 703 Pfam Ion transport protein 84 403 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal13g1493 703 Gene3D Helix hairpin bin 403 467 - -
Lal13g1493 703 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1493 Lal-Chr13 14494872 14498906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1493 50 702 Ion Channels AT2G28260 64.931 0.0 896
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1493 K05391 - gmx:100815543 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1493 13 14494872 14498906 Lal13g1493 13 14494872 14498906 ECH