Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1492 ATGTCTACCTCTGCAACTTCTCTAGCACTTCCTTCTCTTTCACTTCGAACCTTAAAACAACAACAACCTCAATATTTCTCTACACTTTCACTTCTCAACCCTAACTCCAACCCCATTTCCATTTCTGCAACCTTTCTTCGTTCCAACCCCGCACCTGTTTCGACATTGTTGTCGTCTCGCTTTGTTTCCAACGTTGCTCTCTCTGAGTTTGACCAGGAAGAGGATATTTTCAACGAAGGAGATGATGAGCCTCGTTACAATAACAACAGTAACAACAGAAGCAGTGATGAATTCAAGGTCTTTGTTGGTAACCTTCCATTTGGTGTTGACAGTGCCCAACTTGCTGAGATTTTTGAAGGCGCTGGGGAGGTTGAACGGGTTGAGGTTATTTATGATAAAATGACTGGAAGAAGCAGGGGATTTGGTTTTGTGACTATGTCTTCAGCTGAGGAAGTTGAAGCAGCTGTTCAACAATTCAATGGATATGAAGTAGATGGAAGGGAGCTGAGAGTGAATTCTGGACCACCTCCTCCTAAGGATGAGAACTCCAGATTTGGGAATTCCCGATTTGACGGAAATTCCAGATTTGATGGGAACTCCCGATTTGACGGAAATTCCCGGTTTGGGAGGAGTCCTCCTAGAGGAGGTGGTTCTTCTGCAGATAATGGAAATCGAGTTCATGTAAGTAATCTTTCATGGGGTGTTGACCAGTCAGCACTTGAGGAATTGTTCAGTGAACAGGGTAAGGTTTTGGAAGCGAAAGTAATATATGACAGGGAAACTGGAAGATCAAGAGGATTTGGGTTTGTTACCTATGGTTCCCCCGAAGAGGTCAACAAAGCTATTCAGTCCTTGGATGGTGCGGACTTGGATGGCAGATCTATCCGTGTCGCAGTAGCAGATGCCAAGCCCCCGAGACGTCAATTTTGA 930 0.4473 MSTSATSLALPSLSLRTLKQQQPQYFSTLSLLNPNSNPISISATFLRSNPAPVSTLLSSRFVSNVALSEFDQEEDIFNEGDDEPRYNNNSNNRSSDEFKVFVGNLPFGVDSAQLAEIFEGAGEVERVEVIYDKMTGRSRGFGFVTMSSAEEVEAAVQQFNGYEVDGRELRVNSGPPPPKDENSRFGNSRFDGNSRFDGNSRFDGNSRFGRSPPRGGGSSADNGNRVHVSNLSWGVDQSALEELFSEQGKVLEAKVIYDRETGRSRGFGFVTYGSPEEVNKAIQSLDGADLDGRSIRVAVADAKPPRRQF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1492 309 SUPERFAMILY RNA-binding domain, RBD 219 308 IPR035979 GO:0003676
Lal13g1492 309 SUPERFAMILY RNA-binding domain, RBD 90 204 IPR035979 GO:0003676
Lal13g1492 309 MobiDBLite consensus disorder prediction 187 206 - -
Lal13g1492 309 Gene3D - 71 215 IPR012677 -
Lal13g1492 309 Gene3D - 216 309 IPR012677 -
Lal13g1492 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 302 IPR000504 GO:0003723
Lal13g1492 309 SMART rrm2_1 225 298 IPR003954 GO:0003676
Lal13g1492 309 SMART rrm2_1 99 172 IPR003954 GO:0003676
Lal13g1492 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Lal13g1492 309 SMART rrm1_1 99 172 IPR000504 GO:0003723
Lal13g1492 309 SMART rrm1_1 225 298 IPR000504 GO:0003723
Lal13g1492 309 CDD RRM_HP0827_like 99 172 - -
Lal13g1492 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 170 IPR000504 GO:0003723
Lal13g1492 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 296 IPR000504 GO:0003723
Lal13g1492 309 MobiDBLite consensus disorder prediction 166 224 - -
Lal13g1492 309 PANTHER OS02G0815200 PROTEIN 1 306 - -
Lal13g1492 309 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1492 Lal-Chr13 14487152 14489343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1492 100 309 Eukaryotic Initiation Factors Gene Family AT3G16380 27.619 4.23e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1492 - - lang:109360912 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1492 13 14487152 14489343 Lal13g1492 13 14487152 14489343 ECH
Lal11g1133 11 15070012 15074071 Lal13g1492 13 14487152 14489343 PCT
Lal1g1838 1 20663268 20665899 Lal13g1492 13 14487152 14489343 PCT