Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1491 ATGGAGGCAATCTACCACACCAATGGGCACAAAGATGATACCACTAATACTACAACCTTTTGCATATCTAATGGTACTAATGGGGTGGTTGAGGTTGGTGACCCACTCAACTGGGGTGTGGCTGCTGAGTCATTGAAGGGGAGCCATTTGGATGAGGTAAAACGTATGGTGGAAGAGTACCGGAAGCCGGTGGTCCGGCTAGGCGGCGAGACGCTTACTATATCTCAGGTGGCTGCTATCGCTGCCCATGACCAAGGGGTGAAGGTGGAGCTGTCGGAGTCAGCCAGAGCTGGGGTTAAGGCTAGCAGTGACTGGGTCATGGAAAGTATGAACAATGGTACTGATAGCTATGGTGTCACCACCGGCTTCGGTGCTACCTCTCACCGGAGAACCAAACAGGGCGGTGCCTTACAAAAGGAGCTCATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGCACAGAGTTAAATTGCACCCTACCACACACAGCAACAAGAGCAGCAATGCTAGTTAGAATCAACACTCTACTACAAGGTTATTCAGGCATTAGATTTGAAATCTTAGAAGCAATCACAAAGCTACTTAACAACAACATTACACCATGTTTGCCACTTAGAGGTACAATTACAGCTTCAGGTGACCTTGTACCTCTGTCCTACATTGCTGGGTTGCTAACTGGAAGACATAACTCTAAGGCTGTAGGTCCCACAGGAAAGATCCTTAATGCCAAGGAAGCCTTTGAGGTTGCAAATATTGGTCATGAGTTCTTTGAGTTGCAACCGAAAGAAGGACTCGCACTTGTGAATGGCACTGCCGTTGGTTCTGGCTTAGCTTCTATTGTTTTGTTTGAGGCTAATGTATTAGCTGTTTTGGCTGAAATTATTTCAGCAATCTTTGCTGAAGTGATGCAAGGGAAGCCTGAATTCACTGACCATTTGACTCATAAGTTGAAGCATCACCCTGGTCAAATTGAAGCTGCTGCTATTATGGAACACATTTTGGATGGAAGTTGTTATGTGAAAGAAGCTAAGAAGTTGCATGAAACAGATCCTCTTCAAAAGCCTAAACAAGATCGTTACGCGCTGAGGACTTCGCCTCAATGGTTAGGTCCTTTAATTGAAGTGATCAGGTTTTCAACCAAGTCGATAGAGAGGGAGATAAACTCGGTCAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCCTTGCATGGTGGTAATTTTCAAGGCACACCAATTGGAGTATCTATGGATAACACGCGTTTGGCTATCGCGTCGATTGGGAAACTCTTGTTTGCTCAATTCTCCGAGCTTGTCAATGATTTTTACAACAATGGTTTGCCGTCAAATCTCTCTGCTAGTAGGAATCCCAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCAATGGCATCGTATTGCTCTGAGCTACAATATCTCGCGAACCCGGTCACAACCCATGTCCAAAGTGCTGAGCAGCATAACCAAGATGTGAATTCTCTTGGTTTGATTTCATCTAGAAAGACAAATGAATCTATTGAGATCTTGAAGCTCATGTCTTCGACTTTCTTGGTCGCGCTTTGCCAAGCAATTGATTTAAGGCACTTGGAGGAGAATTTGAAGAACACTGTCAAGAACACTGTGAGTCAAGTAGCAAAGAGGACTCTCACCACAGGTGTCAATGGAGAACTTCACCCTTCAAGATTTTGTGAGAAAGATTTGTTGCAAGTTGTTGATAGGGAGTATCTATTTGCCTACATTGATGACCCTTGCAGTGGTACATACCCATTGATGCAAAAGCTAAGGCAAGTGCTTGTGGATCATGCATTAGCAAATGCTGAAACTGAGAAGAATTTTAACACATCAATCTTTCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGGCTCTATTGCCGAAAGAGGTTGAAAGTTCGAGGGCTGCATTCGAGAGTGGCAAATCTGAAATTCCAAACAAGATTAAGGAATGCAGGTCTTATCCACTGTACAAGTTTGTGAGAGAAGAGTTAGGGACTAAGTTACTGACTGGGGAGAAGTTAGTGTCACCAGGTGAAGAGTGTGACAAAGTGTTCACAGCAATGTGCCAAGGCAAAATTATTGATCCTATTCTGGAATGCCTTAAGGAGTGGAATGGTGCTCCTCTTCCAATTTCTTAG 2178 0.4385 MEAIYHTNGHKDDTTNTTTFCISNGTNGVVEVGDPLNWGVAAESLKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDQGVKVELSESARAGVKASSDWVMESMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTELNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAVGPTGKILNAKEAFEVANIGHEFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLAEIISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSCYVKEAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLQVVDREYLFAYIDDPCSGTYPLMQKLRQVLVDHALANAETEKNFNTSIFQKIATFEDELKALLPKEVESSRAAFESGKSEIPNKIKECRSYPLYKFVREELGTKLLTGEKLVSPGEECDKVFTAMCQGKIIDPILECLKEWNGAPLPIS 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1491 725 Gene3D - 25 271 IPR024083 -
Lal13g1491 725 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 34 715 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lal13g1491 725 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 207 223 IPR022313 GO:0016841
Lal13g1491 725 Gene3D Fumarase/aspartase (Central domain) 272 720 - -
Lal13g1491 725 Gene3D - 538 659 IPR023144 -
Lal13g1491 725 Pfam Aromatic amino acid lyase 72 548 IPR001106 -
Lal13g1491 725 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 24 724 - -
Lal13g1491 725 CDD PAL-HAL 70 535 IPR001106 -
Lal13g1491 725 PANTHER HISTIDINE AMMONIA-LYASE 24 724 IPR001106 -
Lal13g1491 725 SUPERFAMILY L-aspartase-like 34 724 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1491 Lal-Chr13 14436618 14441908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1491 27 724 Monolignol Biosynthesis Gene Families AT2G37040 83.095 0.0 1225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1491 K10775 - gmx:100302735 1285.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1491 13 14436618 14441908 Lal13g0139 13 899843 904899 ECH
Lal13g1491 13 14436618 14441908 Lal24g0130 24 943984 948590 ECH
Lal13g1491 13 14436618 14441908 Lal13g1491 13 14436618 14441908 ECH