Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1433 ATGTCTCATACAAACTCAATTGACCAATTCAGGCACAGAACACAAGAAGAGGATGAGGACATGGCCAATTGTCTCATTCTTCTGGCTCAAGGAAAAGTCTCACAATCACAACCTCCACCAGATCAGAAAAATAATAACAATTCAGAGTTATACCTTTACCAATGCAAGACTTGTAACAAATGCTTCCCTTCTTTCCAAGCACTAGGTGGACACAGAGCTAGCCACAAGAAACCAAACAAAGCAAACACTATTGGCACAGAGAAAAGACTAGTTACTACTTTTATCAATGAAGAGGAACATGATCATTATGGCCTCAAGAAAACAAACACAACCCTCTTCATGCAAATACCAAAAAGACCTTTTTCTTTGTATAGAAGCATCACTACTAGTACTACTATTGCTGCTACTACAAAATCTAAAGTTCATGAGTGTTCTATCTGTGGGTCAGAGTTCTCATCAGGACAAGCCTTAGGGGGCCATATGAGGAGACACAGAACTTCTATTAACACTTCTATAACAACAGTGTCTGTGAGTGATGCAAATATTATTGATGGTTGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTCCTGAATACCATGAAATTAAGAAACCCAGAACAGTTTTGAAATTGGATTTGAATCTTCCAGCACCAGATGATGATGGAATAGAATCAATGTTTACATTTCAGAGCAGAGAAAGTGTTATTGTCTTCTCTGCACCTTCTTTGAAATTCAATATGGTATCAGAGCAAGATTGCTCTGAATACCGTTGCGCACTCTTCCTTCCTTTCTTTCTTTCTTCTCATCTTCTTCCTCTTTAA 822 0.3905 MSHTNSIDQFRHRTQEEDEDMANCLILLAQGKVSQSQPPPDQKNNNNSELYLYQCKTCNKCFPSFQALGGHRASHKKPNKANTIGTEKRLVTTFINEEEHDHYGLKKTNTTLFMQIPKRPFSLYRSITTSTTIAATTKSKVHECSICGSEFSSGQALGGHMRRHRTSINTSITTVSVSDANIIDGCGGGGGGGGGSPEYHEIKKPRTVLKLDLNLPAPDDDGIESMFTFQSRESVIVFSAPSLKFNMVSEQDCSEYRCALFLPFFLSSHLLPL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1433 273 PANTHER ZINC FINGER PROTEIN ZAT5 2 242 - -
Lal13g1433 273 SUPERFAMILY beta-beta-alpha zinc fingers 52 164 IPR036236 -
Lal13g1433 273 SMART c2h2final6 142 164 IPR013087 -
Lal13g1433 273 SMART c2h2final6 53 75 IPR013087 -
Lal13g1433 273 Gene3D Classic Zinc Finger 50 164 - -
Lal13g1433 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 164 IPR013087 -
Lal13g1433 273 PANTHER ZINC FINGER PROTEIN ZAT5 2 242 - -
Lal13g1433 273 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Lal13g1433 273 Pfam C2H2-type zinc finger 141 166 - -
Lal13g1433 273 Pfam C2H2-type zinc finger 53 78 - -
Lal13g1433 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Lal13g1433 273 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1433 Lal-Chr13 13822156 13823207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1433 16 243 C2H2 Transcription Factor Family AT5G04390 38.351 3.57e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal13g1433 zf-C2H2_6 1.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1433 - - gmx:100785596 219.164