Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1422 ATGTCAGAACCAACCACCGTTCCCCCAACACCGCCGCTACCGTCTCATAAGAGTTGGGCCGACGAAGCAGACGACGAAGCTGCCGATGAATCCAACGCAACGGCGTCGTCTACTTCAGCAACACCACAAACCTCATCACTAAACGAATTAACCATCGATGAGAACAAAAAACCTCCGAAACACTTGGATGACCCCGACGATTCCAACATCCAAACGGTTACGAGTGGCGAAACGCCGTACACTTCTGCGGCGACGTTTGAAGAGTTGAATCTCTCGCCGGAGCTGCTGAAGGGTTTATATGTGGAGATGAAGTTTCATAAGCCTAGTAAAATTCAAGCTATTAGTTTGCCTATGATTTTGGACCCTCCTCATAGGGATTTGATCGCACAGGCGCATAATGGTTCTGGAAAAACAACGTGTTTCGTGCTTGGGATGCTTAGCCGCGTTGATCCTAAGCTTCAGGCTCCTCAAGCTCTTTGTATTTGCCCAACTAGGGAGTTGGCTATTCAGAATACCGATGTTCTCCGAAAGATGGGGAAGTATACGGGGATTAGTTCTGAATGTGCCATTCCAACAGACAGTAGGGTCGATCTTCCTATAGCGAAACGGGCGCCGATTATGGCCCAAGTGATTATTGGGACTCCAGGCACAATAAAGAAGTGGATGACTTTTAAGAAACTGGGTGTAACCAGATTAAGGATACTTGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAAGATGATTCCTTGAGGATAATGAAAGAGATAGAAAAATTCAATTCTAACTGTCAGGTTCTTTTGTTTTCTGCCACATTCAATGACATTGTCAAGAATTTTGTTTCAAGGACAGTTAGGAAGGATCATAATAAACTTTTTGTGAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAGTACATAGTGCGTTGTCCTGATGAACTCTCTAAGATTGAAGTCATAAAAGATTACATATTTGAAATAGGAGAAAACGTGGGGCAAACTATAATATTTGTGCGCACCAGAGAAAGTGCAAAAATGTTGCATCAAGCACTTGTTGCTTTTGGCTATGAGGTTACTTCCATACAAGGTGCTCTTAGTCATGAGGAGAGAGACAAGATTGTCAAGGAGTTCAAAGATGGTTTAACTCAAGTTCTTATATCAACTGATGTTCTTGCCCGAGGCTTTGATCAACAACAGATTAATTTGGTTATCAATTATGATCTTCCATTGAAGCATACTCCTGAGCATACTCGTGAACGTGAGCCTGATTATGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGACGTTTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGATGAAAGGGATGAAAGGCTTATGAAAAAGATTGAGAACCACTTTGGCACCCTTGTAAATGAGGTACAGAGAAACAGTGTTGAAGACTATAAAGGTGCTCTGAAGGAGGCTGGTTTACTGCAATGA 1482 0.4291 MSEPTTVPPTPPLPSHKSWADEADDEAADESNATASSTSATPQTSSLNELTIDENKKPPKHLDDPDDSNIQTVTSGETPYTSAATFEELNLSPELLKGLYVEMKFHKPSKIQAISLPMILDPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNTDVLRKMGKYTGISSECAIPTDSRVDLPIAKRAPIMAQVIIGTPGTIKKWMTFKKLGVTRLRILVFDEADQMLAEDGFKDDSLRIMKEIEKFNSNCQVLLFSATFNDIVKNFVSRTVRKDHNKLFVKKEELSLDAVKQYIVRCPDELSKIEVIKDYIFEIGENVGQTIIFVRTRESAKMLHQALVAFGYEVTSIQGALSHEERDKIVKEFKDGLTQVLISTDVLARGFDQQQINLVINYDLPLKHTPEHTREREPDYEVYLHRVGRAGRFGRKGAVFNLICDERDERLMKKIENHFGTLVNEVQRNSVEDYKGALKEAGLLQ 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1422 493 Pfam DEAD/DEAH box helicase 110 282 IPR011545 GO:0003676|GO:0005524
Lal13g1422 493 PANTHER DEAD-BOX HELICASE DBP80 63 470 - -
Lal13g1422 493 MobiDBLite consensus disorder prediction 30 52 - -
Lal13g1422 493 MobiDBLite consensus disorder prediction 1 15 - -
Lal13g1422 493 MobiDBLite consensus disorder prediction 53 67 - -
Lal13g1422 493 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 490 IPR001650 -
Lal13g1422 493 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 63 470 - -
Lal13g1422 493 MobiDBLite consensus disorder prediction 1 75 - -
Lal13g1422 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 460 IPR027417 -
Lal13g1422 493 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 294 IPR014001 -
Lal13g1422 493 SMART helicmild6 349 442 IPR001650 -
Lal13g1422 493 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 84 113 IPR014014 GO:0003724
Lal13g1422 493 Gene3D - 63 301 IPR027417 -
Lal13g1422 493 Pfam Helicase conserved C-terminal domain 320 442 IPR001650 -
Lal13g1422 493 Gene3D - 304 486 IPR027417 -
Lal13g1422 493 SMART ultradead3 104 310 IPR014001 -
Lal13g1422 493 CDD SF2_C_DEAD 307 451 - -
Lal13g1422 493 CDD DEADc_DDX19_DDX25 91 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1422 Lal-Chr13 13710564 13725272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1422 77 477 Eukaryotic Initiation Factors Gene Family AT1G72730 36.585 1.57e-72 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1422 K18655 - gmx:100778091 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1422 13 13710564 13725272 Lal13g1422 13 13710564 13725272 ECH