Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1418 ATGGATTGGAATTGGAGCTCAAGAGTACCCTTTGTTCCTCCACCTGACTCTTCCTTAAGCTTCCTCTACAACTCTAGTTACACCCCATATCCAGGAATGGAAGTGAAGCAACAATCAATGGCTGAAACACTTCCTGAAGCAATGGGGAAAATAAACAGTGAGAACCAGCTAGAAAAGAAGAAGAGACTAACAAATGATCAACTTGACTCACTTGAGAGTAGTTTTCAGAAAGAGATAAAGTTGGACCCTGAAAGGAAGATGAAGCTTTCAAAGGATTTAGGGCTCCAACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGACCAAGCAACTTGAAAACTTGTATGATTCTCTTAAACAAGAATTTGATGTCATATTCAAGGAAAAACAGAAGCTTCAGGAAGAGGTTGTGAAATTGAAGGGTATGCTGAGAGATCAAGCTTCAAGAACGAATATATCAGCAGGTTACACAGAAATCTCTGGGGAAGAAACTGTAGAAAGCACATCAGAGGCGCTAAGATGCTGCAACAAACCAGTGAGAACTATTCATCAGCAGCAGAATATTGCAGACGGAAACTATTCTTTCACTGTGCATGATTATAACACGGTTCCAGTGCTACCCTATTGGGCTGGTGTTCCTTATTATCCTTAA 666 0.4114 MDWNWSSRVPFVPPPDSSLSFLYNSSYTPYPGMEVKQQSMAETLPEAMGKINSENQLEKKKRLTNDQLDSLESSFQKEIKLDPERKMKLSKDLGLQPRQIAVWFQNRRARWKTKQLENLYDSLKQEFDVIFKEKQKLQEEVVKLKGMLRDQASRTNISAGYTEISGEETVESTSEALRCCNKPVRTIHQQQNIADGNYSFTVHDYNTVPVLPYWAGVPYYP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1418 221 Pfam Homeodomain 59 112 IPR001356 GO:0003677
Lal13g1418 221 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Lal13g1418 221 SMART HOX_1 56 118 IPR001356 GO:0003677
Lal13g1418 221 Gene3D - 51 122 - -
Lal13g1418 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 212 IPR045224 GO:0003700
Lal13g1418 221 CDD homeodomain 59 115 IPR001356 GO:0003677
Lal13g1418 221 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Lal13g1418 221 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 212 - -
Lal13g1418 221 Coils Coil 54 74 - -
Lal13g1418 221 Coils Coil 106 154 - -
Lal13g1418 221 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Lal13g1418 221 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Lal13g1418 221 SUPERFAMILY Homeodomain-like 46 116 IPR009057 -
Lal13g1418 221 Pfam Homeobox associated leucine zipper 114 148 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1418 Lal-Chr13 13634625 13636793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1418 1 144 Homeobox Transcription Factor Family AT5G03790 51.852 2.54e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal13g1418 Homeodomain 5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1418 - - gmx:100778007 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1418 13 13634625 13636793 Lal13g1418 13 13634625 13636793 ECH