Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1415 ATGGAAGAACAAAAGTTGAACCACACTGTTGTTTCTGTAGTTTCATCAATAACAAACATGAACAATAATGAAGAAACAAAAGCAACAATAACAACAGTGCCTCTTCCTCCTCCTCCTTCTTCTTATGCAGTGGCAGAAGTAACAGCAATGATAGCAGCACAAGGAAACAGTGGAAGAGGTAGTGTGGGTAAGAAGAAAAGAGGGAGGCCAAGAAAATATGACTCAGATGGGAAATTGAATGAGAGGTATCAAAGTCCAAAATCACCACCAGGTTTTACTTTGTCTCCAACTCAACCAAACAAGGCTTGTGGCAAATCAAGTTTTGGTGAGGCGTTTGCAAACTCTGCTGGTGGGGATTTTACACCACATGTAGTGACTATTTATAAAGGAGAGGGTCTGTTTGAGATTTTATCTTTGTCAGGATCATTCGCAGTTTCCGAAAATAGTGACATAAGAAGTCGAAGTGGTGGATTGAGTGTCTTATTAGCCGGCCCTGATGGCCGTGTGTTAGGCGGCGCTGTTGCTGGTCTATTGACAGCTGCTGGCCCCATTCAAATTGTAATGGGAAGCTTCATTCCAAATGGTACCAAGACTCATAAAAAGAAGCAAAACCGCAAACATACGGCAGCCTCTCCTATTTCGGGTGGTCCAGATACAGTGACAGCAACAAGACCTTTGTCACAAGAAAATCCTAATGTTGATGGTGATAACTTTCATTTAGTCATGTCTCAGTTACAAGAACAAAGCAACATAGAATCTGTTAGTGTTACAACAAGTGGTGATACACAGAACATTGATGCTACACCTAATGCTGCTGCTACTAGGAATGGTTCTAATGAATTATCAGATCAAAGGGTATCCCCAGACATCAATATATCTTTGCAAGATGAATAG 894 0.4116 MEEQKLNHTVVSVVSSITNMNNNEETKATITTVPLPPPPSSYAVAEVTAMIAAQGNSGRGSVGKKKRGRPRKYDSDGKLNERYQSPKSPPGFTLSPTQPNKACGKSSFGEAFANSAGGDFTPHVVTIYKGEGLFEILSLSGSFAVSENSDIRSRSGGLSVLLAGPDGRVLGGAVAGLLTAAGPIQIVMGSFIPNGTKTHKKKQNRKHTAASPISGGPDTVTATRPLSQENPNVDGDNFHLVMSQLQEQSNIESVSVTTSGDTQNIDATPNAAATRNGSNELSDQRVSPDINISLQDE 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1415 297 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 197 - -
Lal13g1415 297 MobiDBLite consensus disorder prediction 55 105 - -
Lal13g1415 297 CDD DUF296 118 191 IPR005175 -
Lal13g1415 297 Pfam Plants and Prokaryotes Conserved (PCC) domain 116 191 IPR005175 -
Lal13g1415 297 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 19 131 IPR039605 GO:0003680
Lal13g1415 297 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 131 296 IPR039605 GO:0003680
Lal13g1415 297 ProSiteProfiles PPC domain profile profile. 55 216 IPR005175 -
Lal13g1415 297 MobiDBLite consensus disorder prediction 86 104 - -
Lal13g1415 297 MobiDBLite consensus disorder prediction 250 297 - -
Lal13g1415 297 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 131 296 - -
Lal13g1415 297 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 19 131 - -
Lal13g1415 297 MobiDBLite consensus disorder prediction 195 236 - -
Lal13g1415 297 MobiDBLite consensus disorder prediction 208 236 - -
Lal13g1415 297 Gene3D - 101 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1415 Lal-Chr13 13581250 13584518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1415 36 221 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 33.969 3.23e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1415 - - lang:109335220 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1415 13 13581250 13584518 Lal13g1415 13 13581250 13584518 ECH