Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1413 ATGGAGAAACGAAAAGCTGGAAGGAAGAAATTCCATGAAACTAGGCACCCAATCTATAAAGGTGTGAGACAGAGAAATGGGAAATGGGTATGTGAGTTAAGACAACCTAATAACAAAACTCGTGTATGGCTTGGAACTTTTGTTCACCCTGACATGGCAGCTATAGCATATGATGTTGCAGCTTTGGCTTTCAAAGGAGACACTGCATCCTTAAATTTCCCTAACACGGCTACGTTGTTGCCACACCTTAACTCACGAACCTCTTCCATTAGGGCCATTCAGATTGCTGCAATGCAAGAAGCTCAGAAATACTTTACTAGAGAGTTGAAACCCAAAGAGAATATTAGTGCTAGAAATGGTTCTGAGTTATTGTTCTCGGTTGATGAAATAGGTTTAGAGGAAGGTTCTAGAAGCTTCTTTTGGGATGAAGAAGAGGTTTTTAACATGCCAGGGTTGATGAATAGCATGGCAGAAGGGTTGATTATCACACCACCAGCTTTGCAGAGAGGATTCAATTGGGTTGGTGGGGAAACTTTTGTGGACTTGACTCTCTGGGGAGACTAA 564 0.4202 MEKRKAGRKKFHETRHPIYKGVRQRNGKWVCELRQPNNKTRVWLGTFVHPDMAAIAYDVAALAFKGDTASLNFPNTATLLPHLNSRTSSIRAIQIAAMQEAQKYFTRELKPKENISARNGSELLFSVDEIGLEEGSRSFFWDEEEVFNMPGLMNSMAEGLIITPPALQRGFNWVGGETFVDLTLWGD 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1413 187 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Lal13g1413 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 185 - -
Lal13g1413 187 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Lal13g1413 187 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Lal13g1413 187 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 7 185 - -
Lal13g1413 187 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677
Lal13g1413 187 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Lal13g1413 187 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Lal13g1413 187 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
Lal13g1413 187 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1413 Lal-Chr13 13536759 13537322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1413 3 186 AP2-EREBP Transcription Factor Family AT4G25470 44.920 4.54e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal13g1413 AP2 3.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1413 - - aprc:113870892 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1413 13 13536759 13537322 Lal11g1203 11 15777536 15778123 PCT
Lal13g1413 13 13536759 13537322 Lal20g0139 20 924833 925417 PCT