Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1412 ATGGAAATGGAAGATCATCATCACCATAACCATAACCATGAGCATCAACAACAGTACGCCATAACTGATCTCATGCACCTCATGACTGGACCAAGGTCACTTCATTTCCCTTCCATACCATTACCAACAGCCACCCAACCCACGGCGGCTGAGATTTTTCCCGGCCACCACCGGAATCTGATACCTCACCACCACCAACACTACGAGATGATGATGTTTGGTCGTGACATCATGCATCCATCAAGTAACATTCATGACTATGCCTCTACTGATTCTATTGCTCCTCCTACAGCCACCACTGCTGCCACCACTAGTGCTTTAACTCCTCCTCTTAGTGGCGGCTTAGAGGTTGAGACCACATGCTGCATCGGTGGAGATTCATCCACTGGAAGATGGCCCAGACAAGAAACTCTCACTCTTCTTGATATCAGATCTCAACTCCACCCTAAGTTCAAAGAGGCTAATCAAAAGGGACCCTTGTGGGATGAAGTGTCTAGGATCATGTCTGAAGACCATGGATATCAAAGGAATGGGAAAAAGTGCAAAGAGAAGTTTGAGAATCTCTACAAATATTACAAGAAGACAAAGGAAGGAAAAGCTGGAAGACAAGATGGGAAGCATTACAGATTCTTTCGCCAACTTGAAGCCTTATATGGAGAAAACATTAACCATTTTTCAGTTCCAGAAACCAACTTTGGTAGCAACATTCGTTTAGAGACAAGCAGCATTAACACTCAGTCTCAAACAAATGTTCAAAATTTTAGCCTCGGTCTCACTAACTCCACTGACTTTGACACATCATTAACAGATAATGATGGCAATGATCATAATGATAGCATTGACGGGCTTATGGAGATCAATAATGGGTCAATGTTGGAGAAGAGAAAAAATGAAAGGAAGAGTAGAAAATGCTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATAAGGAAGCTCGTGGAGAAGCAAGAGGAATGGTTAGATAAACTAGTAAAGACAATGGAGCAGAAGGAAAAGGAGAGGGTGTTGAGAGAAGAAGAGTGGAAGAAACAAGAGGTGAATAGGTTAGAGAGGGAGCACAAGTTTTGGGCTAAAGAGAGAGCATGGATTGAAGCAAGAGATGCTGCTATAATGGAAACTTTTCAAAAGCTATCAGGAGGAGAAATAAAACGTAGTCAAGCTCATGAGGGTGTTGAAGTAGCAGCTGAGAGGAGAATCAACAGTGAAAACCAGAGTGGAGATGGAAGTGAAATTTTGAATAGCAGTGTCAAAGTTGGTGATAACTGGCAAGAACATGAGACTACAAGGCTGCAAGAGTTGAGAACTGAGGTGGAGACATGGGAGGAAGTAGCAAACAAAATGGCTTGTAATGGATATGAAAGAACTTCTTTGATGTGCAAAGAGAAATGGGAGAGTATCATCAGCAACAATGGCAAGGTAGGAAACAAGAAGAGGAAGGAAAATTCAAGTTGTTTTTACTTTGAAAACAATGATCAATCTTCCTTATACAATCAAGGAAATGCCTATTGTGATATCAATGATCAAAGGCCTCAAACAAAAGATGGTTCATCACCTTCAAATTCCAAGGTTGGTCATGCTGACCCTTGCTTTCCCTTCTTGATGAGTGAGGGAGGAAATTTGTGGGAGAATTATGGGTTAAAGCTCAATAAAGGAAACCAAAACCATTGA 1692 0.4167 MEMEDHHHHNHNHEHQQQYAITDLMHLMTGPRSLHFPSIPLPTATQPTAAEIFPGHHRNLIPHHHQHYEMMMFGRDIMHPSSNIHDYASTDSIAPPTATTAATTSALTPPLSGGLEVETTCCIGGDSSTGRWPRQETLTLLDIRSQLHPKFKEANQKGPLWDEVSRIMSEDHGYQRNGKKCKEKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENINHFSVPETNFGSNIRLETSSINTQSQTNVQNFSLGLTNSTDFDTSLTDNDGNDHNDSIDGLMEINNGSMLEKRKNERKSRKCWKVKIKDFIDSQIRKLVEKQEEWLDKLVKTMEQKEKERVLREEEWKKQEVNRLEREHKFWAKERAWIEARDAAIMETFQKLSGGEIKRSQAHEGVEVAAERRINSENQSGDGSEILNSSVKVGDNWQEHETTRLQELRTEVETWEEVANKMACNGYERTSLMCKEKWESIISNNGKVGNKKRKENSSCFYFENNDQSSLYNQGNAYCDINDQRPQTKDGSSPSNSKVGHADPCFPFLMSEGGNLWENYGLKLNKGNQNH 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1412 563 Gene3D - 428 478 - -
Lal13g1412 563 Gene3D - 132 194 - -
Lal13g1412 563 Pfam Myb/SANT-like DNA-binding domain 131 217 IPR044822 -
Lal13g1412 563 Pfam Myb/SANT-like DNA-binding domain 430 500 IPR044822 -
Lal13g1412 563 SMART sant 345 477 IPR001005 -
Lal13g1412 563 SMART sant 128 191 IPR001005 -
Lal13g1412 563 Coils Coil 438 458 - -
Lal13g1412 563 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 39 559 - -
Lal13g1412 563 ProSiteProfiles Myb-like domain profile. 124 189 IPR001005 -
Lal13g1412 563 PANTHER - 39 559 - -
Lal13g1412 563 Coils Coil 321 360 - -
Lal13g1412 563 CDD GT1 131 196 - -
Lal13g1412 563 ProSiteProfiles Myb-like domain profile. 429 475 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1412 Lal-Chr13 13509304 13512904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1412 18 558 Trihelix Transcription Factor Family AT5G03680 40.164 9.10e-117 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lal13g1412 Myb_DNA-bind_4 1.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1412 - - lang:109335088 1070.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1202 11 15754457 15759940 Lal13g1412 13 13509304 13512904 PCT
Lal20g0138 20 906556 911866 Lal13g1412 13 13509304 13512904 PCT
Lal13g1412 13 13509304 13512904 Lal11g1202 11 15754457 15759940 PCT
Lal13g1412 13 13509304 13512904 Lal20g0138 20 906556 911866 PCT