Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1408 ATGGATGCAAACAAAAAGAGTTCTTGTAATTCTAATGATAAAGTTCTAGTTAAGAGTGAAACCTCTCAGTTAGATTCTGAACAATTATCTTCGGCTTTTGATGTTATAGCCTTTTCTGAACACTTTAATTTACCTCCCATTGATTTTGAAGTGTTTCCAACCTTGATGAACACGCCACCAATGCAGCCGAGTTCTCGAGAATTCGAGAACGTTGGTATGCCAGTGCCAGTCTCATCATTGCCCGAGCCACTTGATTGTTTGAAAGGAAACATGGTTCCTTCATTTTTGTCCAAAACCTTTGACCTGGTGGACGATCCGGGTTTGGATCGGATTATATCGTGGGGCGCCAACGGTGTGAGCTTCGTGGTGTGGGATCCTTTGGAGTTCTCAAGATTTGTCTTGCCTAGGAATTTCAAGCACAACAATTTCTCAAGTTTTGTTCGCCAGCTTAATACTTATGTGGTCTCTGGCAGCTGCAGAAAAAGTTTATCTAATCTAAAGCGAGGATTCCGCAAGATTCATACCGATAAATGGGAGTTTTTTAATGAAGCTTTCCAGCGAGGGAAGAAGCATTTACTGAAGAACATCCAAAGGCGAAGATCACAGCAGGTTGGGAGCTATCTTGGGCCTTGTACTGATTCAAGGAAGTCTGGAGTTGAGGTTGAAATAGAGAGGCTGAGGAAGGAGAGGAGCATGTTAATGAAAGAGGTGGTCGATTTGCAGCAACAACAGCGAAGAACGGTTCACCATGCTGGAGAAGTGAATCAGAGGCTCCAATCTGCAGAGCAAAGGCAGAAACAAATGGTTTCTTTCTTGGCCGAGTTATTTCATAATCCGGCCTTTCTAGCTCGACTTAAGCTTAAGAAGGAACAAAGGGAGAAAGATTCTCCAAGAGTTAGAAGGAAGTTTGTCAAGCAGCACCGGCCTGAAGTTGGAACATCAGAAACTATGAAAGAAGAGCATATTGTGAGGTACCAACCTGATTGGAGAAATATAACTATCTCTCCGGAAACTCCCAAAGTTACTCCGAGTTCCATTGAACACTCACCTCACTACCTTTCACAGGATTTGGCAACAGAAATTAATGCAGACACCGAAAATCTGACTCCACAAATTGAGAATATAGTAACAGACGAATTGGCTGCAGTGCAAGATATCACGGCAACTCAAAAAATCAATGAAGAAGGATCATCTAGCTTTGGACTTAAAGATCACTTTTTCAAAGGGAAAAATGTCATGAGCCCGAATGAACAAGTTCTTCCAGAGTATTTTGTTTCCTTTCCGATGTTTTCCCCTCTTGGAACTGAAAGCATTATCAAGCAAGAAGACATATGGGACCCTGACTTCAATATCAGTGGTGCTGCTTCAAACTGTGGGAATGAGCTGTGGGGTAATCTTATCAATTACCAAGTTCCAGAATTTGGAGTGACAAGTGGCATATCAGACTTCTGGGACATCGGCTCCGGAAGTTTTGGCATCGATAAGTGGCTGGCTGATGATGAAACTCCTTTCGATGAAACAGGTAGTGAAGTTGGTCAGCGAAAAGACGATAGATCTAAGAATGATCCATAA 1572 0.4243 MDANKKSSCNSNDKVLVKSETSQLDSEQLSSAFDVIAFSEHFNLPPIDFEVFPTLMNTPPMQPSSREFENVGMPVPVSSLPEPLDCLKGNMVPSFLSKTFDLVDDPGLDRIISWGANGVSFVVWDPLEFSRFVLPRNFKHNNFSSFVRQLNTYVVSGSCRKSLSNLKRGFRKIHTDKWEFFNEAFQRGKKHLLKNIQRRRSQQVGSYLGPCTDSRKSGVEVEIERLRKERSMLMKEVVDLQQQQRRTVHHAGEVNQRLQSAEQRQKQMVSFLAELFHNPAFLARLKLKKEQREKDSPRVRRKFVKQHRPEVGTSETMKEEHIVRYQPDWRNITISPETPKVTPSSIEHSPHYLSQDLATEINADTENLTPQIENIVTDELAAVQDITATQKINEEGSSSFGLKDHFFKGKNVMSPNEQVLPEYFVSFPMFSPLGTESIIKQEDIWDPDFNISGAASNCGNELWGNLINYQVPEFGVTSGISDFWDIGSGSFGIDKWLADDETPFDETGSEVGQRKDDRSKNDP 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1408 523 Gene3D - 88 200 IPR036388 -
Lal13g1408 523 MobiDBLite consensus disorder prediction 292 317 - -
Lal13g1408 523 SUPERFAMILY "Winged helix" DNA-binding domain 91 199 IPR036390 -
Lal13g1408 523 PRINTS Heat shock factor (HSF) domain signature 95 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal13g1408 523 PRINTS Heat shock factor (HSF) domain signature 133 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal13g1408 523 PRINTS Heat shock factor (HSF) domain signature 146 158 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal13g1408 523 Pfam HSF-type DNA-binding 95 199 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal13g1408 523 MobiDBLite consensus disorder prediction 501 523 - -
Lal13g1408 523 SMART hsfneu3 91 199 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal13g1408 523 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 82 515 - -
Lal13g1408 523 Coils Coil 216 243 - -
Lal13g1408 523 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 82 515 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1408 Lal-Chr13 13441359 13444759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1408 68 478 HSF AT5G03720 44.048 1.45e-88 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal13g1408 HSF_DNA-bind 3.7e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1408 K09419 - gmx:100780835 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1408 13 13441359 13444759 Lal13g1408 13 13441359 13444759 ECH