Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1407 ATGGAAATGCCTTCTAGAAGATCCAACTATTCTCTCCTAAGTCAAATTCCCGATGAACAGTTCAGCGTCGGCGCCGCCTCTTCCGGGAACACCGCACCGTCATCCTCCGGCGACTTAAAAACCAACCGTTCCATGTTCGATATGGACATATTCTCCGATAACAGATCAGCTCAACAGCAAGGGAACAACCGGATCGGGAATTTGTTCACCTCGATCGGACTGCAGAGACAATCAAGCGGAAGCAGTTACGGCGAAAGCTCCATCTCCGGCGGTTACGATTATGCTCCGGCTCTGTCCACGGCGGCGTTTGGCGACGTGGATACGTTTGGTTACCTTCACGAGGATGGACACATGATTGGAGTTGGCGGGGAGGTCAGAAATAGGTTACCAGATACTCCGGCCATCGCCGGAGGGTTTTCTGGGAAGAGCTGGGCGCAGCAAACGGAGGAGAGTTACCATTTGCAGCTAGCCCTGGTGCTTCGGCTTTCGTCCAGTGCGGCATGTGCGGATGATCCTAATTTCCTTGATCCAGGGACGGATGAATCCGCCATGGGGTGGTCGAAGTCGGCTGAGACGGTGTCACATAGATTCTGGGTGCATGGCTGCCTATCATACTATGACAAAGTTCCTGATGGATTTTACCTCATTCGTGGGATAGATTCCTTTGTTTGGACTGTGTGCACCGGTCTGCAGGAAAATGGCCGAATTCCAACTATTGAGAAACTAAAGTCTGTGGATCCCTGCGTCAATTCTGCACTTGAAGTAGTTTTGGTGGACCGACGCAGTGACCCCAGCTTAAAAGAACTTGAAAACAGAGTACATGATATTTCTAGTAGCAGCATAACAACAACAGAGGTTGTTGATCAGCTGTCCAAGCTGGTTTGCGACCATATGGGGGGTTCAAATTCTTTTGGGGAAGATGACTTTGTTTCCATCTGGAGAGATTGCAGTAATGATCTGAAAGATTGCTTAGGATCTGTTGTTGTTCCCATAGGTAGTCTGTCTGCCGGCCTCTGCAGGCATCGTGCTATTTTATTCAAAGTTCTGGCTGATGCCATTGATTTACCCTGTCGAATTGCAAAGGGTTGTAAATATTGCAAAAGGGATGATGCTGCATCTTGTCTTGTCTGGTTTCGGCATGTCAATGACAGGGAATATCTTGTTGACTTAATAAAGAAGCCAGGTTACTTATGTGAGCCCGATTCAATGCTTAACGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGCTTTCCAAGAGTTAAACCAGCTGAACCTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTCGGACTGTTTGTGTCTTGATCTTGTCTTTGATAACAGTTCTGCAGCTGTTACTGATGGAGATTCTGGTTTCCTCATTCCAGATCAGTTTGATGGGAAGTACAAGGACATGAATAACGCCAGATCAATAACAAATGATAGCAACAGAAGTTCTCACCTGACTTTGCATGCACAAGTTTCTCATTCAAGCACACATGATCAAGATTCTAAAACAACGGGTGCCAAGGATCTTCCGCCTATAAAGCATAAGCATCCTATTGGTATAAAACCCCCATTAGCACTAACTAATCCCAATAATGACATTATTGAGGAAAATAGGTTTTTAGAAGGAAGTCATCTTATTCCTAGCAAACCTACTCGAGAGCTTGCCCTTGACATGGAGGATTTGGATATATCATGGAGTGATCTTGCTTTAAAAGAAAGAATAGGATCAGGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGACTCGGAGGTTGCTGTGAAAATTTTGATGGAACAAGATTTTCATGCTGAAATGGTCAATGAATTCTTAAGGGAGGTTGCAATAATGAAAAGCTTGCGGCATCCAAACATCGTTTTATTGATGGGGGCAGTCACTCAGCCTCCGAACTTATCAATTGTCACAGAATATTTATCAAGGGGTAGCTTATATAGGCTGTTGCATAGACCTGGTGCCAAAGAGGCATTAGATGAAAGGCGTAGGCTTTGTATGGCTTATGATGTGGCAAAAGGGATGAATTATCTTCATAAACGTAATCCCCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTTGTTGATAAGAAATATACAGTGAAGGTTTGTGATTTTGGGCTTTCCCGTCTGAAGGCCAATACATTTCTCTCATCCAAGTCAGCTGCTGGAACTCCTGAGTGGATGGCTCCAGAAGTTCTTCGTGACGAGCCATCAAATGAGAAGTCAGATGTTTACAGTTTTGGTGTTATCTTGTGGGAGATTGCAACATTGCAACAGCCATGGGGCAATTTGAATCCAGCACAGGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGGCTTGAGATCCCACATGATTTGAATCCCCATATAGCTGCATTAATTGAAGTTTGCTGGGCCAATGAGCCCTGGAAACGCCCTTCATTTTCTAGTATTATGGATTCTCTGAGGCCATTGATCAAACCGCCTACGACTCAACCTGGTCATTCAAACATGCCATTACTTAGCTGA 2547 0.4499 MEMPSRRSNYSLLSQIPDEQFSVGAASSGNTAPSSSGDLKTNRSMFDMDIFSDNRSAQQQGNNRIGNLFTSIGLQRQSSGSSYGESSISGGYDYAPALSTAAFGDVDTFGYLHEDGHMIGVGGEVRNRLPDTPAIAGGFSGKSWAQQTEESYHLQLALVLRLSSSAACADDPNFLDPGTDESAMGWSKSAETVSHRFWVHGCLSYYDKVPDGFYLIRGIDSFVWTVCTGLQENGRIPTIEKLKSVDPCVNSALEVVLVDRRSDPSLKELENRVHDISSSSITTTEVVDQLSKLVCDHMGGSNSFGEDDFVSIWRDCSNDLKDCLGSVVVPIGSLSAGLCRHRAILFKVLADAIDLPCRIAKGCKYCKRDDAASCLVWFRHVNDREYLVDLIKKPGYLCEPDSMLNGPSSISFSSPLRFPRVKPAEPTIDFRSLAKQYFSDCLCLDLVFDNSSAAVTDGDSGFLIPDQFDGKYKDMNNARSITNDSNRSSHLTLHAQVSHSSTHDQDSKTTGAKDLPPIKHKHPIGIKPPLALTNPNNDIIEENRFLEGSHLIPSKPTRELALDMEDLDISWSDLALKERIGSGSFGTVHRAEWNDSEVAVKILMEQDFHAEMVNEFLREVAIMKSLRHPNIVLLMGAVTQPPNLSIVTEYLSRGSLYRLLHRPGAKEALDERRRLCMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWEIATLQQPWGNLNPAQVVAAVGFKGKRLEIPHDLNPHIAALIEVCWANEPWKRPSFSSIMDSLRPLIKPPTTQPGHSNMPLLS 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1407 848 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 132 839 - -
Lal13g1407 848 Gene3D Transferase(Phosphotransferase) domain 1 653 839 - -
Lal13g1407 848 SMART serkin_6 574 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1407 848 Pfam Ethylene-responsive protein kinase Le-CTR1 190 398 - -
Lal13g1407 848 Pfam Protein tyrosine and serine/threonine kinase 575 828 IPR001245 GO:0004672|GO:0006468
Lal13g1407 848 Gene3D Phosphorylase Kinase; domain 1 567 652 - -
Lal13g1407 848 CDD STKc_MAP3K-like 580 828 - -
Lal13g1407 848 PRINTS Tyrosine kinase catalytic domain signature 648 661 IPR001245 GO:0004672|GO:0006468
Lal13g1407 848 PRINTS Tyrosine kinase catalytic domain signature 689 707 IPR001245 GO:0004672|GO:0006468
Lal13g1407 848 PRINTS Tyrosine kinase catalytic domain signature 736 746 IPR001245 GO:0004672|GO:0006468
Lal13g1407 848 PRINTS Tyrosine kinase catalytic domain signature 755 777 IPR001245 GO:0004672|GO:0006468
Lal13g1407 848 PRINTS Tyrosine kinase catalytic domain signature 799 821 IPR001245 GO:0004672|GO:0006468
Lal13g1407 848 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 132 839 - -
Lal13g1407 848 ProSiteProfiles Protein kinase domain profile. 574 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1407 848 MobiDBLite consensus disorder prediction 506 521 - -
Lal13g1407 848 MobiDBLite consensus disorder prediction 479 505 - -
Lal13g1407 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Lal13g1407 848 ProSitePatterns Protein kinases ATP-binding region signature. 580 601 IPR017441 GO:0005524
Lal13g1407 848 MobiDBLite consensus disorder prediction 479 531 - -
Lal13g1407 848 SUPERFAMILY Protein kinase-like (PK-like) 553 827 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1407 Lal-Chr13 13425042 13436724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1407 1 844 MAP Kinase Kinase Kinase AT5G03730 62.514 0.0 945
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lal13g1407 PK_Tyr_Ser-Thr 1.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1407 K14510 - gmx:100800648 1230.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0132 20 872408 880072 Lal13g1407 13 13425042 13436724 PCT
Lal13g1407 13 13425042 13436724 Lal20g0132 20 872408 880072 PCT