Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1385 ATGACCTCCTCCATCTTTCTAAACCCACACCCTCCCTTCCCCTCCCCATTCCAACACCATCACTTTCTAAAACTAAGACCAACCCCAATACCCTCTTTCACTCCACTTACCACAAAACACCCTTCTTTTAAATCCTCCTTCAAAATCCATCATAACAACAATAGTAACAATAACTCCACCACTTCCCAAACCCATTCCTTATCCAACACTTTCCAATTCCTCAAACCTTACCTTCTCTCACACCTCAAACCCATCCTCTCCGCCTGGCTATGCTCCGCCCTCTCCGTCTACTCCCTCTCCATACTAATCTCCAAATTCTCCACCATCACCGCCACCGCCGCCATCGACGCTGCCCAATTCCCCCTATTGGGCTGTTTGGTGGCCACCCGGCTGGTAACTAACTACTGCCAGCATGCCCTTCTGTGGGACGCTGCCCTGAAAGCTGTGTATGAGCTTAGGGTACATGTCTTTGAGCGTGTTTTGGAGAGAGAGTTAGGGTATTTCGAATCTAAGGATGGTGTTTCAGTTGGGGATATTGCGTATCGAATCACTTCTGAAGCTTCTGATGTTGCTGATAATTTATATGCTGTTCTCAATACTATAGTACCCAGTACTCTACAGTTATTTGCTATGATGGCTCAGATGTTAATTATAAGCCCTGTCCTTTCTTTGATTTCAGCCATGGTTATTCCGTGCATGGGACTTGTTGTTGTCTTTCTTGGTAAAGAACTTCGTAACATATCTAAAGAGGCACATCTTAGCATTGCTGCTATGTCAGCATATCTAAATGAGATTCTGCCGGCGGTTCTCTTTGTGAAATCAAACAACGGTGAGTTGTGTGAGAGGGCCAGGTTTAAGAGGCTTGCTCATATTGACTATTCTGCAAAGCTGAACAAGAAAAGGATGAAGGCAGTCATTCCTCAGGTCATACAAGCTATTTATTTTGGAATCCTTTCCGTACTTTGTGCTGGCTCAGTGATGATTTCAAGAGGTTCATTTGATGGCTCTCGATTGGTTTCATTCGTGACGTCATTGCTTTTCTTGATTGACCCAATCCAGGATGTGGGAAAAGCTTATAATGAATGGAGGCAGGGAGAACCAGCTGTTGAACGCTTGTTTACTATGACCAGGTTCCAATATAAGGTGGTTGAGAAGCCAAAGGCTGTTGATTTAGACTACGTTAAAGGGGAACTTAAGTTTTGTGATGTCTCATTTAAGTATAATGATGACATGCCACATATTTTAAATGGATTGAATCTTCATATTAGAGCTGGAGAGATAGCTGCTCTTGTCGGTCCTTCTGGTGGAGGGAAAACGACGATTGTGAAATTGTTGCTTCGGCTTTATGATCCTATATCTGGCTGCATAGTGGTTGATAACCATAACATCCAAAACATTCGGTTGCAAAGTTTGAGAAGGCATGTTGGTCTTGTTTCTCAAGATATAACACTTTTTTCAGGTACAGTTGCTGAAAACATTGGTTATAGGGATCTAATCACAAAAATTGACATGGAGAGGGTGAAGCATGTAGCTGAAACTGCTCATGCAGATGAGTTCATTAGAAATCTTCCAGAAGGATACAAAACCAATATTGGACCAAGGGGCTCAACTTTAAGCGGAGGCCAGAGGCAAAGGTTGTCTATTGCAAGGGCACTCTATCAAAATCCTTCTATATTAATTCTGGATGAGGCAACTTCTGCTTTAGATAGTAAATCTGAGTTATTGGTGAAACAAGCTATACAGCGTTTAATGGAAAATCGTACTGTGCTTGTGATCTCCCATCGCTTGGAAACAATTATGATGGCTGAACGAATATTCCTTTTAGATAATGGGAAACTAGAAGAGCTTCCTCGTTCATCAACTATAGTTGATGATTATAGAACAAGTGATACAATGAGTATATAA 1905 0.421 MTSSIFLNPHPPFPSPFQHHHFLKLRPTPIPSFTPLTTKHPSFKSSFKIHHNNNSNNNSTTSQTHSLSNTFQFLKPYLLSHLKPILSAWLCSALSVYSLSILISKFSTITATAAIDAAQFPLLGCLVATRLVTNYCQHALLWDAALKAVYELRVHVFERVLERELGYFESKDGVSVGDIAYRITSEASDVADNLYAVLNTIVPSTLQLFAMMAQMLIISPVLSLISAMVIPCMGLVVVFLGKELRNISKEAHLSIAAMSAYLNEILPAVLFVKSNNGELCERARFKRLAHIDYSAKLNKKRMKAVIPQVIQAIYFGILSVLCAGSVMISRGSFDGSRLVSFVTSLLFLIDPIQDVGKAYNEWRQGEPAVERLFTMTRFQYKVVEKPKAVDLDYVKGELKFCDVSFKYNDDMPHILNGLNLHIRAGEIAALVGPSGGGKTTIVKLLLRLYDPISGCIVVDNHNIQNIRLQSLRRHVGLVSQDITLFSGTVAENIGYRDLITKIDMERVKHVAETAHADEFIRNLPEGYKTNIGPRGSTLSGGQRQRLSIARALYQNPSILILDEATSALDSKSELLVKQAIQRLMENRTVLVISHRLETIMMAERIFLLDNGKLEELPRSSTIVDDYRTSDTMSI 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1385 634 PANTHER ABC TRANSPORTER B FAMILY MEMBER 29, CHLOROPLASTIC 44 622 - -
Lal13g1385 634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 620 IPR027417 -
Lal13g1385 634 Pfam ABC transporter transmembrane region 95 351 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g1385 634 Gene3D ABC transporter type 1, transmembrane domain 55 377 IPR036640 GO:0005524|GO:0016021
Lal13g1385 634 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 398 634 IPR003439 GO:0005524
Lal13g1385 634 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 44 622 IPR039421 -
Lal13g1385 634 ProSitePatterns ABC transporters family signature. 538 552 IPR017871 GO:0005524
Lal13g1385 634 CDD ABC_6TM_exporters 122 372 - -
Lal13g1385 634 Gene3D - 388 632 IPR027417 -
Lal13g1385 634 SMART AAA_5 424 612 IPR003593 -
Lal13g1385 634 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 90 364 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g1385 634 Pfam ABC transporter 415 566 IPR003439 GO:0005524
Lal13g1385 634 SUPERFAMILY ABC transporter transmembrane region 72 375 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1385 Lal-Chr13 13131481 13145128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1385 141 616 Calmodulin-binding Proteins AT2G36910 30.101 1.05e-55 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1385 K02021 - gmx:100788075 832.017