Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1380 ATGGTTTCTTTATCAACGGCATCCCATTTTTCCCTATTATCACACAAAACGGGTTCATCTATATCAGAACAGTTAAGCACTGTGAGGGATCATGAGGATGATTCTGATGTTCTTATCGAGTGTAGAGAAGTGTACAAGTCATTTGGGGAAAAGAAAATCTTAAATGGTTCAGCTTCAAGACATGGTGAAGCTGTTGGAATAATTGGTCCCTCTGGGACCGGAAAATCTACAGTTTTGAAGATTATTGCAGGACTTCTAGCTCCAGACAAGGGAGAAGTTTATATTCGAGGGAGAAAAAGAGTTGGTTTAATAAGTGACGAGGAGATATCTGGTCTTCGGATTGGATTAGTGTTCCAAAGTGCAGCACTTTTTGATTCTTTGACTGTTCGTGAAATGTATGAAAAATCAAGCATGTCTGAGGACCAGATATCAGAGCTTGTCACGGAATGCTTGGCTGCGGTTGGATTGAAGGGAGTTGAGGATCGGTTGCCTTCTGAGTTATCAGGTGGGATGAAAAAACGAGTTGCCTTAGCTCGGTCTATTATTTATGATACTACAAAGGATTCAATTGAGCAGAGGGGATGTTTTGGATGGTTGCATCTGTTGCCTTCTGTATCTGTTCATGAATCAGACCCTGTTTGGGTCCCATCTGTTCTTGAACCAGGAGCTGTCTGGGTGCTTTTGTATGATGAACCAACTGCTGGACTTGATCCCATTGCATCCACTGTTGTTGAGGATCTTATTCGTTCTGTGCACATAAAAGGATGTGATGCGCTTGGGAAAACCTGGGAATATTGCATCTTATGTTGTTGTCACTCACCAACATAG 828 0.4203 MVSLSTASHFSLLSHKTGSSISEQLSTVRDHEDDSDVLIECREVYKSFGEKKILNGSASRHGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGRKRVGLISDEEISGLRIGLVFQSAALFDSLTVREMYEKSSMSEDQISELVTECLAAVGLKGVEDRLPSELSGGMKKRVALARSIIYDTTKDSIEQRGCFGWLHLLPSVSVHESDPVWVPSVLEPGAVWVLLYDEPTAGLDPIASTVVEDLIRSVHIKGCDALGKTWEYCILCCCHSPT 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1380 275 Pfam ABC transporter 60 182 IPR003439 GO:0005524
Lal13g1380 275 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 11 259 - -
Lal13g1380 275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 251 IPR027417 -
Lal13g1380 275 ProSitePatterns ABC transporters family signature. 167 181 IPR017871 GO:0005524
Lal13g1380 275 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 39 273 IPR003439 GO:0005524
Lal13g1380 275 SMART AAA_5 61 220 IPR003593 -
Lal13g1380 275 Gene3D - 25 275 IPR027417 -
Lal13g1380 275 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 11 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1380 Lal-Chr13 13065885 13074722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1380 38 184 Calmodulin-binding Proteins AT2G36910 29.697 1.68e-08 53.5