Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1364 ATGTCCATAAACCACTACTCTTCAGAACTTGCAGAACTGTGGTTGACTCAGCAACAACAACAACAAAAACAACATCAACCCATCTCAATGGAACCAATCCCAAACCCTTCTATTTCTAGGCCCCACCACTACCATCATCCTCAACCCACATGGTTCAACCCTCACTCTCAGTTAACCCACAACAACCAAAACGACGACGAAGAACATGACAACAGTAACAACGCCACAACGACCACCACATCACAACAAGGAGCGGAGGAATACGAGAAGGAGTACATGTTCGAGAAGCCGTTAACGCCGAGTGACGTCGGAAAACTCAACCGTCTCGTCATCCCAAAGCAGCACGCTGAGAGATACTTCCCTTTGGGAGCGAGTGGTAGTGGCGGCGACTCGGGCGAGTGCAAGGGCTTGCTTCTGAGTTTCGAAGACGAGTCAGGTAAATGCTGGCGGTTCCGGTACTCGTATTGGAACAGCAGCCAGAGCTATGTTTTAACTAAAGGGTGGAGCCGTTACGTTAAGGACAAGCGCTTAGAATCCGGCGACGTAGTTTTATTCGAGCGTCATCGAAGTGATGCTCAACGCCATTTTATCGGGTGGAGACGCCGCCGGAGAAGTGAGGGCACCGCGCCGGTGCATGTTTACAGGGCGGGACACGGTAAGAGTAGTGGTGATGGGAGTGAGGTTGGTGGTGTGGGCATGGGGTGGACCAGAGGGCTCTATCCTGCGCATCGTTATCCTACGCATCAACACTTGCCATACCAACATAACTGTCTTCATGCAGGGTCCCAAGGTCAGAACCAAAGAAGACCAATGAGAAATATTTACAGTTCAAGGGTGCTTAGGTTGTTTGGAGTGAACATGGAATGTCAACCTGAATATGATTCAGGACCCTCCGAACCTGAATGTTCATACAATATCCCATGA 924 0.5 MSINHYSSELAELWLTQQQQQQKQHQPISMEPIPNPSISRPHHYHHPQPTWFNPHSQLTHNNQNDDEEHDNSNNATTTTTSQQGAEEYEKEYMFEKPLTPSDVGKLNRLVIPKQHAERYFPLGASGSGGDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLESGDVVLFERHRSDAQRHFIGWRRRRRSEGTAPVHVYRAGHGKSSGDGSEVGGVGMGWTRGLYPAHRYPTHQHLPYQHNCLHAGSQGQNQRRPMRNIYSSRVLRLFGVNMECQPEYDSGPSEPECSYNIP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1364 307 Gene3D - 82 211 IPR015300 -
Lal13g1364 307 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 26 300 - -
Lal13g1364 307 SMART B3_2 94 203 IPR003340 GO:0003677
Lal13g1364 307 Pfam B3 DNA binding domain 94 202 IPR003340 GO:0003677
Lal13g1364 307 SUPERFAMILY DNA-binding pseudobarrel domain 91 202 IPR015300 -
Lal13g1364 307 CDD B3_DNA 93 196 IPR003340 GO:0003677
Lal13g1364 307 MobiDBLite consensus disorder prediction 17 86 - -
Lal13g1364 307 MobiDBLite consensus disorder prediction 17 33 - -
Lal13g1364 307 ProSiteProfiles B3 DNA-binding domain profile. 94 202 IPR003340 GO:0003677
Lal13g1364 307 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 26 300 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1364 Lal-Chr13 12889574 12891912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1364 90 306 RAV Transcription Factor Family AT5G06250 49.550 1.59e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal13g1364 B3 3.5e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1364 - - aprc:113872948 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1364 13 12889574 12891912 Lal13g1364 13 12889574 12891912 ECH
Lal1g1739 1 19819148 19820457 Lal13g1364 13 12889574 12891912 PCT
Lal20g0178 20 1244451 1246680 Lal13g1364 13 12889574 12891912 PCT