Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1323 ATGGATGAAATTGAAGTTCCTCAATATTTCATATGCCCAATATCCCTTCAAATTATGAAGGACCCAGTCACTGCTATAACAGGAATAACTTACGACCGAGACAACATTGAACAATGGCTATACTCAAACCAGAACACAACATGCCCTGTTACCAAACATCCCCTAACAAAAGACTCTGACTTAACACCAAATCACACACTTCGTCGTTTGATCCAAGCTTGGTGCACCCAAAATTCTTCACTTGGCATTGATCAAATTCCCACACCCAAGTCACCACTTAACAAGGTTCAAGTGCTCAAGCTCCTAAAAGAGCCAAAGATGAAGCTCAAAAGTCTAAGGCAATTGGAATTGTTCGCGGCGGAGAACGAAAGGAATAAGAAGTGTTTGCTAGAGGCTGGTGTTCCAAAGGCTATGATCTTGTTCATAGTAGATTGTTATAGAAAAAGAGAAATTGATGAGGGTATTGAAGAAGCTCTAAGTTTGCTTCAATTTGTTAAGGTTCCTGCACAAGATGTGAAGCTTCTTGTAGAGGAAAATGATCAAATATTGGATTCTCTAACATGGGTTTTAGGCATTGATAGAATGGAAAATTCAGTTTCTGTCAAATCACATGCTGTTTTAGTTCTCAAAAGAATCATCCAGAAGAGTGAGCATTGTGTTATGGAGAGACTAAAACCAGTGTTCTTTGAAATGATTGTGAGGATTTTAAGAAATGGGATTATTACACAACATGGGTTGAATGCTGCTCTTCATGTTTTGTTAGGTGCTTGTCCTTGGGGACGAAATAGGATCATGATGGTTGAATCTGGTGCTGTTTTTGAACTCATAGAGATTGAATTGAATGCACCAGAGAAGAAAATCACAGAACTAATTCTAGCTATACTATTTCATCTATGTTCTTGTGCTGATGGAAGAGCTCAGTTTTTGAGTCACAAAGGATCAATAGCAATGTTAACTGAGAGAATCTTGAAGGTTTCGGTCACTGTGGATGATAGAGCCATATTTATGCTCTCTTTGATATCTAAATTCTCGGTCACACAAATGGTGTTGCAGGAAATGTTGCAGGTTGGAACTGTGTCAAAACTTTGCATGTTGCTTCAGGCTGATCATGCTAAATATCTTAAAGACAAAGCATTAGAGATACTAAAATCTCACTCTGGGGTTTGGAAAAATTCTCCTTGTTTTCCTGATCGGTCTTATTATGCAAGCTTGCATATGGGAATCAATGCACTGTGA 1236 0.3843 MDEIEVPQYFICPISLQIMKDPVTAITGITYDRDNIEQWLYSNQNTTCPVTKHPLTKDSDLTPNHTLRRLIQAWCTQNSSLGIDQIPTPKSPLNKVQVLKLLKEPKMKLKSLRQLELFAAENERNKKCLLEAGVPKAMILFIVDCYRKREIDEGIEEALSLLQFVKVPAQDVKLLVEENDQILDSLTWVLGIDRMENSVSVKSHAVLVLKRIIQKSEHCVMERLKPVFFEMIVRILRNGIITQHGLNAALHVLLGACPWGRNRIMMVESGAVFELIEIELNAPEKKITELILAILFHLCSCADGRAQFLSHKGSIAMLTERILKVSVTVDDRAIFMLSLISKFSVTQMVLQEMLQVGTVSKLCMLLQADHAKYLKDKALEILKSHSGVWKNSPCFPDRSYYASLHMGINAL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1323 411 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Lal13g1323 411 SUPERFAMILY ARM repeat 103 375 IPR016024 -
Lal13g1323 411 SUPERFAMILY RING/U-box 3 83 - -
Lal13g1323 411 CDD RING-Ubox_PUB 10 52 IPR045210 -
Lal13g1323 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Lal13g1323 411 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Lal13g1323 411 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Lal13g1323 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 399 - -
Lal13g1323 411 PANTHER WDSAM1 PROTEIN 3 399 IPR045185 GO:0061630
Lal13g1323 411 Gene3D - 96 390 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1323 Lal-Chr13 12156037 12157272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1323 2 395 U-box Gene Family AT3G11840 41.818 8.70e-115 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1323 - - gmx:100798446 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1323 13 12156037 12157272 Lal13g1323 13 12156037 12157272 ECH
Lal11g1281 11 16481539 16482774 Lal13g1323 13 12156037 12157272 PCT
Lal1g1731 1 19746318 19747308 Lal13g1323 13 12156037 12157272 PCT
Lal20g0197 20 1384533 1385768 Lal13g1323 13 12156037 12157272 PCT