Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1322 ATGGCTGAGATTGATGTTCCACCATTCTTCCTTTGCCCCATTTCTTTAGAAATCATGAAGGATCCAGTGACTATCTCTACAGGAATCACATATGATAGAGAGGGCATAGAAAAATGGCTCTTCTTTGGGAAAACCAAGACTTGTCCTGTCACCAAACAACCCCTAATAGACTCTAATAACCTAACCCCAAACCACACGCTCCGGCGACTGGTTCAGGCGTGGTGCACCATCAACGCTTCTCACGGTGTTGAAAGGATTCCAACACCTAAATCTCCGATCAACAAATCACAGATACAGAAACTCATCAGAGACGCTTCTCTTTCGCCTCAGTCACAGACTCAATGTCTTGGAAGACTCAAATCAATTGCTTCTGAGAGTGAAACCAACAAGCGCTGCATGGAGGCTTCTGGAGCTGTTGAGTTCTTAGCATCAGTTGTAATAAGCAACATCGTTTCTTCATCATCTAATAACCAAGATGATGATGCCGATGGTCGGTTCGACCTGAAAAACGGTGCAGGTGATGAAGCCTTAAGCATACTATATAATCTTCATTTATCAGAAGCTGGATTGAAGATACTCTTAGGTTTCAAATGTGGTGAGTTTATTGATTCCTTAACAAGAGTTATGCAAAGGGGAATCTATGACTCAAGAGCATATGCAGTTTTATTATTGAAATCAATATCTGAAGTTGCAAACCAAGTTTATATAGCCAATTTGAAAAATGAATTGTTCATGGAGTTAGTACAAGTTCTTAAAGACCAGATTTCACCAAAGGCTTCAAAAGCAACACTGCAGGCACTGATCCAACTCAGTCCTTGGGGCAGAAACAGGATCAAAGCAGTGGAAGCAGGTGCTGTTCCGGTTTTGGTAGAACTTCTTCTTGATTCCAAGGAACGAAAACCTTGTGAAATGATGCTAGTGCTTCTGGAAATGTTGTGCCAATGTGCGGAAGGACGCGCCGAGTTGTTGAGCCATTGTGCGAGCTTAGCCATGGTATCGAAGAAGATTTTGAGGGTTTCAACCATTGCTAATGATAGGGCTTTGAGGATTCTTCTTTCTATTTCAAGATTCTCCGCAACACCGAATGTGGTTCAAGAAATGTTACAGCTTGGGGTGGTGGCCAAGCTTTGTTTGGTGCTTCAAGTGGATTGTGGAAACAAGGCCAAGGAGAAAGCAAGAGAGATACTCAAATTGCATGCCCATGCTTGGAGGAATTCTCCTTGCAAACCCAGCAATTTGCTTGTTTCATATCCCTAA 1257 0.4256 MAEIDVPPFFLCPISLEIMKDPVTISTGITYDREGIEKWLFFGKTKTCPVTKQPLIDSNNLTPNHTLRRLVQAWCTINASHGVERIPTPKSPINKSQIQKLIRDASLSPQSQTQCLGRLKSIASESETNKRCMEASGAVEFLASVVISNIVSSSSNNQDDDADGRFDLKNGAGDEALSILYNLHLSEAGLKILLGFKCGEFIDSLTRVMQRGIYDSRAYAVLLLKSISEVANQVYIANLKNELFMELVQVLKDQISPKASKATLQALIQLSPWGRNRIKAVEAGAVPVLVELLLDSKERKPCEMMLVLLEMLCQCAEGRAELLSHCASLAMVSKKILRVSTIANDRALRILLSISRFSATPNVVQEMLQLGVVAKLCLVLQVDCGNKAKEKAREILKLHAHAWRNSPCKPSNLLVSYP 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1322 418 SUPERFAMILY ARM repeat 205 383 IPR016024 -
Lal13g1322 418 SUPERFAMILY RING/U-box 4 81 - -
Lal13g1322 418 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Lal13g1322 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 418 - -
Lal13g1322 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Lal13g1322 418 Gene3D - 93 408 IPR011989 -
Lal13g1322 418 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Lal13g1322 418 CDD RING-Ubox_PUB 10 53 IPR045210 -
Lal13g1322 418 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Lal13g1322 418 PANTHER WDSAM1 PROTEIN 1 418 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1322 Lal-Chr13 12124422 12125678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1322 3 418 U-box Gene Family AT3G52450 59.122 1.05e-177 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1322 - - gmx:100811258 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1322 13 12124422 12125678 Lal13g1322 13 12124422 12125678 ECH
Lal13g1322 13 12124422 12125678 Lal11g1281 11 16481539 16482774 PCT
Lal13g1322 13 12124422 12125678 Lal1g1731 1 19746318 19747308 PCT
Lal13g1322 13 12124422 12125678 Lal20g0197 20 1384533 1385768 PCT