Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1321 ATGGAATGGCTGTTAAAAAGAACTGGAGTCCTACATTCAAGTAAAAAATATTTGCCACATGTGGCAATATCCATTTACTACTGGAGCCTCGAGAAAAGGCTAATTATGGAGAGTGAGTGGAAGATTAATACTGAGATATCACCAAATTGCCCTAGGTGTGGTTCTTCTAACACAAAGTTTTGCTACTACAATAACTACAGCTTAACTCAACCAAGGTATTTTTGCAAAGGCTGCAGAAGGTACTGGACCAAAGGAGGATCCCTCCGGAATGTGCCGGTCGGCGGCGGATGCCGGAAAAACAGAAGAGGTAATAAGAACTTAAGACAATCCATTGATGGTCTTGCTTTCAAAAATTCACCTTGTGGTGGTGATGCTACAAACAACCCAGTTGGGAATTCTTATGATCCTATAATGACTTCATGTTCTAGTTCATCAATGGTAAGTGGACCAAATATTGATCTTGCACTAGTTTATGCAAATTTCCTCACTCAAAAGCCAGATTCGGGTGCTGGGGTAGATGAGAATCCTGAACAAATGCATGCAGCATTTGATCATTCTCAAGAAAATTCAAGGCTATTATCTAACACAGAAATTGGCCCAAGTACTATGTTGCCTGAAGAACTTGTTCTTACTGGATGTTTGAATCTTCCAGAACAATCATCCACAGGATCCCGTTTTTGTGATGGTAATAACCCACTGTACTTTACTGGGTTCAACTCAATGCAGATTCAACAAGAAGCTACAATTGAGCAATGTAATATTCATCATGATGCTCTCAATTTTGAGTTGCCTCCATTGCCAGGTGAAGAGGAAGTGTTACATGATATGATGTGGTCCAATTCTGAAGCTCCACTTTTTCAATCTGAAGCTCATGGTGATGCAAACTTGCTCGTCAATAATTGGAGCCCCTTCAATTTGGAAATGGATCCTTCTTTTCCAAACCCTTGA 948 0.403 MEWLLKRTGVLHSSKKYLPHVAISIYYWSLEKRLIMESEWKINTEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNKNLRQSIDGLAFKNSPCGGDATNNPVGNSYDPIMTSCSSSSMVSGPNIDLALVYANFLTQKPDSGAGVDENPEQMHAAFDHSQENSRLLSNTEIGPSTMLPEELVLTGCLNLPEQSSTGSRFCDGNNPLYFTGFNSMQIQQEATIEQCNIHHDALNFELPPLPGEEEVLHDMMWSNSEAPLFQSEAHGDANLLVNNWSPFNLEMDPSFPNP 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1321 315 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Lal13g1321 315 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 36 308 - -
Lal13g1321 315 Pfam Dof domain, zinc finger 49 102 IPR003851 GO:0003677|GO:0006355
Lal13g1321 315 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 308 IPR045174 GO:0003700|GO:0006355
Lal13g1321 315 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1321 Lal-Chr13 12091356 12092895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1321 29 309 C2C2-Dof Transcription Factor Family AT3G52440 36.964 2.75e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal13g1321 zf-Dof 5e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1321 13 12091356 12092895 Lal13g1321 13 12091356 12092895 ECH