LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal13g1318	ATGAACGACTTGTTCTCTAACTCATTCTCTCGCTTACGCGGCGATCGTGCCTCACCGGACAGCCACCACGTGATTGAGATGTCCACCGCCGCCGCTCCATCCGGCGGAGGAGTGAACCTAGACAAATTCTTCGATGACGTGGAAGGTGTTAAGGATGAGCTGAAGGAGCTTGATCAGATAGCTAAGAACCTTCAAAACAGCAACGAGCAGAGCAAGACGCTTCACGACGCGAAGAGCGTAAAGGAATTGCGTTCCCGAATGGACGACGATGTTTCACTCGCACTTAAGAAGGCTAAGGTTGTTAAGATCCGGCTGGAGGCGTTGGAGCGATCCAACGCCGCGAACCGGAGTTTGCCAGGATGTGGACCGGGTTCGTCGTCAGATCGAACCCGGACATCCGTGGTAATTGGGTTGAAGAAGAAGCTTCAGGACTCTATGGAGAGTTTTAATGAAGTCCGGCAGAAGATCTCGTCGGAGTATAGGGACACCGTGCAGCGACGGTACTTCAATGTCACCGGCGAGAACCCCGATGAGAACACTCTTGATCGATTGATCTCTACAGGTGAGAGTGAGACCTTCCTTCAGAAAGCCATTCAAGAACAAGGCAGGGGCAGAATTCTGGACACCATCAATGAAATTCAAGAGAGACATGATGCTGTGAAAGAGTTGGAGAAGAGTCTCCTGGAGTTGCACCAAGTGTTCCTTGATATGGCGGTGTTAGTGCAATCTCAAGGTGAGCAATTGAATGACATTGAGAGTCATGTGCAAAGAGCTAACTCGTTTGTGCAAACTGGAGTTGAGCAGTTACACACTGCACGGAAGCACCAGAGAAACACCAGGAAATGGACCTGTTACGGTATTATACTTGTTCTTGTGATAGTCTTGTTTATTGTACTCTTCACTGTTAGACCATGGGAAAAAAACGGTAGTAGTCAACCCGCTCCTGCTCAAACACCTCCACTTTCTCCTCCTCCTCCTAAGCCTTAA	987	0.4934	MNDLFSNSFSRLRGDRASPDSHHVIEMSTAAAPSGGGVNLDKFFDDVEGVKDELKELDQIAKNLQNSNEQSKTLHDAKSVKELRSRMDDDVSLALKKAKVVKIRLEALERSNAANRSLPGCGPGSSSDRTRTSVVIGLKKKLQDSMESFNEVRQKISSEYRDTVQRRYFNVTGENPDENTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKELEKSLLELHQVFLDMAVLVQSQGEQLNDIESHVQRANSFVQTGVEQLHTARKHQRNTRKWTCYGIILVLVIVLFIVLFTVRPWEKNGSSQPAPAQTPPLSPPPPKP	328

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal13g1318	328	PANTHER	SYNTAXIN OF PLANTS 122 PROTEIN	8	309	-	-
	Lal13g1318	328	SUPERFAMILY	t-snare proteins	38	265	IPR010989	GO:0016020\|GO:0016192
	Lal13g1318	328	MobiDBLite	consensus disorder prediction	308	328	-	-
	Lal13g1318	328	ProSitePatterns	Syntaxin / epimorphin family signature.	216	255	IPR006012	GO:0005484\|GO:0006886\|GO:0016020
	Lal13g1318	328	Gene3D	-	38	170	-	-
	Lal13g1318	328	SMART	SynN_4	35	161	IPR006011	GO:0016020
	Lal13g1318	328	SMART	tSNARE_6	205	272	IPR000727	-
	Lal13g1318	328	Coils	Coil	47	74	-	-
	Lal13g1318	328	PANTHER	SYNTAXIN	8	309	IPR045242	-
	Lal13g1318	328	CDD	SNARE_syntaxin1-like	209	269	-	-
	Lal13g1318	328	CDD	SynN	40	197	IPR006011	GO:0016020
	Lal13g1318	328	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lal13g1318	328	Gene3D	-	207	303	-	-
	Lal13g1318	328	Pfam	Syntaxin	42	245	IPR006011	GO:0016020
	Lal13g1318	328	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	210	272	IPR000727	-
	Lal13g1318	328	Pfam	SNARE domain	246	298	IPR000727	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal13g1318	Lal-Chr13	12017677	12023571	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal13g1318	31	328	SNARE and Associated Proteins	AT3G11820	67.857	1.47e-143	406

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal13g1318	K08486		-	gmx:100809258	466.077