Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1316 ATGAAGATGCAAACTGTTTATTTTAAAGAGCATGAAGGAATTGTACACAATTCTGTTGGACAGTTATCAACTGTAAATTCTGCACCATGGTGGACTAGTGCCATTGAATCTTATGGCCAAATGAAACCCTTTTCATTGGAGATTCCAAACTATGTAGATCAACTTGGTCCTAATAAGCAATCTATAAGAGGAGTTGAACAATTGTTTGATAAAGGACATACAACCTCTTTTACCATCTTTCCAGATGATTGTAAAATGTTAGGTGTTGAACATAAGCATCAGGCAACCTTGTCAATGCAGTCATCACTTGCTGAGTACCATAATTGTTTTGAGCTTGGGTTTAATCAGCCTGTGATCTATGCAACATATCCTTGTCTGGATCAATTTTATGGGCTCTACTCCACTCCAGGACCTCAAATTTTGGGGCGTATAATGCTGCCACTTAACATGACATCTGATGAAGGACCAACTTATGTAAATGCTAAGCAGTACCATGGAATCATGAGACGTAGGCAGTCACGTGCAAAAGCTTTACTTGAGAATAAATGGAGAAAAAGGAACAAGCCATATATGCACGAATCGCGCCATCTCCATGCACTGCGACGGCCACGAGGATGTGGAGGTCGCTTCTTAAACACAAGGAGTTCAACTAATGGAAATGGTAAAACTGGTTGTGGTCAAGAATTGCACTCTAGTGGTTCTCAGAGTTCTGAAGTCCTGCAATCTTATATTGGAACCTTAAATTCATACAAAGAGACTAATGGAAGCAGTCCAAATATTTCAGTGGCAGAGGTGACAAGCATGTATTCTAGGGGAGGTCTTTATAGTTTTGCTGTCAATCATCTTGAACCTACTAACCTCTCTCTGGCAGACATTATTAATAGTGGACATGGTATCGCCGATACGAAGTCCACAAATTCGGTTGCAGCAGCAGGTAACTGCTGTAACCTTAAAGATTGA 960 0.4031 MKMQTVYFKEHEGIVHNSVGQLSTVNSAPWWTSAIESYGQMKPFSLEIPNYVDQLGPNKQSIRGVEQLFDKGHTTSFTIFPDDCKMLGVEHKHQATLSMQSSLAEYHNCFELGFNQPVIYATYPCLDQFYGLYSTPGPQILGRIMLPLNMTSDEGPTYVNAKQYHGIMRRRQSRAKALLENKWRKRNKPYMHESRHLHALRRPRGCGGRFLNTRSSTNGNGKTGCGQELHSSGSQSSEVLQSYIGTLNSYKETNGSSPNISVAEVTSMYSRGGLYSFAVNHLEPTNLSLADIINSGHGIADTKSTNSVAAAGNCCNLKD 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1316 319 SMART cbf3 152 213 IPR001289 GO:0003700|GO:0006355
Lal13g1316 319 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 318 IPR001289 GO:0003700|GO:0006355
Lal13g1316 319 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 156 210 IPR001289 GO:0003700|GO:0006355
Lal13g1316 319 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 318 - -
Lal13g1316 319 PRINTS CCAAT-binding transcription factor subunit B signature 156 178 IPR001289 GO:0003700|GO:0006355
Lal13g1316 319 PRINTS CCAAT-binding transcription factor subunit B signature 187 210 IPR001289 GO:0003700|GO:0006355
Lal13g1316 319 ProSiteProfiles NF-YA/HAP2 family profile. 153 213 IPR001289 GO:0003700|GO:0006355
Lal13g1316 319 Gene3D - 154 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1316 Lal-Chr13 11997902 12004965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1316 1 318 CCAAT-HAP2 Transcription Factor Family AT3G05690 39.655 6.95e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lal13g1316 CBFB_NFYA 9.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1316 K08064 - gmx:100808195 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1316 13 11997902 12004965 Lal13g1316 13 11997902 12004965 ECH
Lal5g0309 5 2720287 2725134 Lal13g1316 13 11997902 12004965 PCT
Lal18g0445 18 3684762 3690832 Lal13g1316 13 11997902 12004965 PCT
Lal13g1316 13 11997902 12004965 Lal5g0309 5 2720287 2725134 PCT
Lal13g1316 13 11997902 12004965 Lal18g0445 18 3684762 3690832 PCT