Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1305 ATGAGCAACACAACTGATGGATCTGGATTTCTTGGTTCCAACAATATCAATGGCTTTGGCTATGGCATTGGAATTTCAATTGGAATTCTCCTGCTCATCATAACCATTACTCTCACCTCCTTTTTCTGCACCCGAATACAGATTGCATCACTCGACCGTAATATTGCGGTTGTGGTGACTCTGAATCACAATCATACGGTTGCATCAGGCCGCAACGCAACCGTATTGGACCGTATCAGGTCACATCGGACCACATCAGGCCGCAACACAACCGTGCCATCTGCTCCTACTCGAAGGAGAGACATCCCTGATCTCCTTGAACCACAACACTCAATATTAGATGTGGGGTTAGATGAATCAACAATTCTAAGTTACCCAAAGATGGTGTATTCTGAAGCCAAGCTTAGTAAGTCAGATTGGACAGCAACATGTTGCTCCATATGTCTTTCAGATTACAAGGCAAATGATATGCTTCGGGTATTGCCAGATTGTGAGCATCTCTTTCATCCAAAGTGCATTGACCCTTGGTTGAGGTTGCATCCTACTTGTCCAGTTTGCAGAACATCTCCATTCCCAACACCACTCTCAACACCTCTTGCTGAAGTGGTTCCTTTAGCAAGCAGGCGAGATTGA 633 0.4502 MSNTTDGSGFLGSNNINGFGYGIGISIGILLLIITITLTSFFCTRIQIASLDRNIAVVVTLNHNHTVASGRNATVLDRIRSHRTTSGRNTTVPSAPTRRRDIPDLLEPQHSILDVGLDESTILSYPKMVYSEAKLSKSDWTATCCSICLSDYKANDMLRVLPDCEHLFHPKCIDPWLRLHPTCPVCRTSPFPTPLSTPLAEVVPLASRRD 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1305 210 CDD RING-H2_PA-TM-RING 144 187 - -
Lal13g1305 210 SUPERFAMILY RING/U-box 126 192 - -
Lal13g1305 210 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 6 52 - -
Lal13g1305 210 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 87 208 - -
Lal13g1305 210 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Lal13g1305 210 Pfam Ring finger domain 145 187 IPR001841 -
Lal13g1305 210 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 52 IPR045899 -
Lal13g1305 210 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 87 208 IPR045899 -
Lal13g1305 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 191 IPR013083 -
Lal13g1305 210 SMART ring_2 145 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1305 Lal-Chr13 11768882 11770480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1305 7 208 C3H Transcription Factor Family AT5G06490 45.146 5.15e-53 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1305 - - gmx:100811799 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1283 11 16504041 16504523 Lal13g1305 13 11768882 11770480 PCT
Lal20g0202 20 1426636 1427163 Lal13g1305 13 11768882 11770480 PCT
Lal13g1305 13 11768882 11770480 Lal11g1283 11 16504041 16504523 PCT
Lal13g1305 13 11768882 11770480 Lal20g0202 20 1426636 1427163 PCT