Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1284 ATGAGGAATACGTCCTCTTTTTGGTTGCGCCTAGCACGTCTGGATGCACATCCCTTGCCCATGAGAGTGAGAATGGAGAAAGCGAATTCATTAGGATTACTAAGAACAAAATCGGAGCAGCTAGTGGAATCGATGGTGGCGGCTCTCAAGTCACCACAATCAAGTGACCATTCAACTAACGGAACGGTGGAAGGTGGAGGAACAATGTCGAGGAAGTCGAGCCGGCGGCTTATAGCGGCGTCGCCAGGGCGTGGCGGCGGAAAGAACACACACATAAGGAAATCAAGAAGTGCTCAGATAAGCCAAATGAAGTTTGAGTTGGATGAAGTGAGTAGTGGTGCTGCTCTTAGTAGGGCTTCTAGTGCTAGCTTGGGACTTTCATTCTCCTTCACTGGCTTTGCTATGCCCCCTGATGAAATTGCTGATTCCAAACCTTTCAGTGATGATGATATTCCTGAGGATGTTGAAGCTGGAATTAAGACAAAGTTTCAATTGGAAACTACTCTTCCTATATATTTAAAGTTCACTGATGTGTCCTACAAGGTAATGGTTAAAGGCATGACAGCAAGTGTGAAGAAGGATATATTGAATGGGATCAGTGGTTATGTAAGTCCAGGGGAAGTTTTGGCTTTGATGGGTCCTTCAGGAAGTGGAAAAACAACTCTTTTAAATCTGCTTGGAGGTAGGCTAAGCCAGCCTACAATTGGTGGTTCTGTAACTTACAATGACCTTTCATATTCCAAATCCCTCAAGAGCAAGATAGGATTCGTGACACAAGATGATGTTCTGTTTCCTCATCTAACTGTGAAAGAAACATTAACCTATGCAGCTCGGCTAAGAATGCCGAAGACATACACGAAAGAACAAAAGGAAAAACGAGCTTTAGATGTCATCTACGAGCTTGGCTTGGAGAGGTGCCAAGATACTATGATAGGGGGTTCCTTTGTTCGCGGAGTATCCGGCGGAGAGAGGAAGAGAGTTTGTATTGGAAATGAGATCATAATTAACCCCTCTCTTTTGCTTCTTGATGAACCAACATCTGGTTTGGATTCTACAACTGCCTTGAGGATTGTTCAGATGTTGCAAGACATAGCAGAGTCTGGTAAAACAGTAGTGACTACAATCCACCAACCATCAAGCAGACTCTTTCACAAATTCGACAAGTTGATCCTTCTCGGAAAAGGGAGCTTGCTTTACTTCGGAAAAGCGTCCGAAGTAATGAAATACTTCCAATCTATAGGATGTACACCACTGATATCCATGAACCCAGCAGAGTTTTTGCTAGACCTTGCAAATGGAAACATAAATGATGTTTCCCTACCATCAGAGTTAGAGGATAAAGTGCAAATCGGAAATGCAGAAACCGAAACACCGAGTGCGAAACCATCACCAGCAGTTGTACATGAGTATTTGGTGGAGGCATATGAAACTCAAGTTGCAGAAGCAGAGAAGAAAAAAATAATGGTTCCTATCCCCCTTGATGAAGCAGTGAAGTCTAAATTACGTTCTCCGAAACGACAATGGGGGTCAAGTTGGTATGAGCAATATTCCATATTATTTTCGAGAGGAATCAAAGAACGGAGGCACGACTATTTTAGCTGGTTGAGAATCACCCAAGTTCTATCCACTGCAATCATCTTAGGATTACTATGGTGGCAATCTGATGCTAACAACCCAAAAGATCTGCAAGATCAGGCTGGGTTGCTTTTCTTTATTGCTGTGTTCTGGGGATTCTTTCCTGTTTTCACTGCAATATTCACATTCCCTCAAGAGAGAGCCATGCTGACAAAGGAAAGAGCAGCTGATATGTATAGACTAAGTGCATATTTCTTGGCTAGAACTACAAGTGACCTTCCACTAGACCTTGTATTACCAGTACTTTTTCTTCTTGTTGTTTATTTCATGGCCGGATTGAGACTCAGTGCCGGCCCCTTTTTCCTCACCATTCTCACTGTTTTCCTCTGCATTGTGGCAGCGCAGGGTCTTGGACTTGCTATTGGTGCTACACTTATGGACTTGAAAAGAGCAACAACATTGGCTTCAGTAACTGTCATGACCTTCATGCTGGCTGGAGGATTTTTTGTTGAGAGAGTTCCTATATTTATTTCCTGGATCCGGTACCTGTCATTCAACTACCACACCTACAAACTTTTGCTAAAGGTCCAATATGAACACATCACACCTAGCATAAATGGGATCAAAATTGGCAGTGGTTTAACAGAAGTATCTGCTCTGATAGCCATGGTTTTCGGTTACCGTTTCTTGGCATATCTTTCTTTACGGCGGATGAAACTTCAATCCGGAGCTTAA 2310 0.4307 MRNTSSFWLRLARLDAHPLPMRVRMEKANSLGLLRTKSEQLVESMVAALKSPQSSDHSTNGTVEGGGTMSRKSSRRLIAASPGRGGGKNTHIRKSRSAQISQMKFELDEVSSGAALSRASSASLGLSFSFTGFAMPPDEIADSKPFSDDDIPEDVEAGIKTKFQLETTLPIYLKFTDVSYKVMVKGMTASVKKDILNGISGYVSPGEVLALMGPSGSGKTTLLNLLGGRLSQPTIGGSVTYNDLSYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAARLRMPKTYTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLLLDEPTSGLDSTTALRIVQMLQDIAESGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEVMKYFQSIGCTPLISMNPAEFLLDLANGNINDVSLPSELEDKVQIGNAETETPSAKPSPAVVHEYLVEAYETQVAEAEKKKIMVPIPLDEAVKSKLRSPKRQWGSSWYEQYSILFSRGIKERRHDYFSWLRITQVLSTAIILGLLWWQSDANNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERAADMYRLSAYFLARTTSDLPLDLVLPVLFLLVVYFMAGLRLSAGPFFLTILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVERVPIFISWIRYLSFNYHTYKLLLKVQYEHITPSINGIKIGSGLTEVSALIAMVFGYRFLAYLSLRRMKLQSGA 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1284 769 MobiDBLite consensus disorder prediction 48 69 - -
Lal13g1284 769 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 35 763 - -
Lal13g1284 769 Gene3D - 172 414 IPR027417 -
Lal13g1284 769 Pfam ABC-2 type transporter 376 436 IPR043926 GO:0140359
Lal13g1284 769 MobiDBLite consensus disorder prediction 48 94 - -
Lal13g1284 769 CDD ABCG_EPDR 170 401 - -
Lal13g1284 769 Pfam ABC transporter 196 347 IPR003439 GO:0005524
Lal13g1284 769 SMART AAA_5 205 396 IPR003593 -
Lal13g1284 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 412 IPR027417 -
Lal13g1284 769 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 173 419 IPR003439 GO:0005524
Lal13g1284 769 Pfam ABC-2 type transporter 514 723 IPR013525 GO:0016020|GO:0140359
Lal13g1284 769 ProSitePatterns ABC transporters family signature. 319 333 IPR017871 GO:0005524
Lal13g1284 769 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 35 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1284 Lal-Chr13 11535702 11549291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1284 140 433 Calmodulin-binding Proteins AT2G36910 29.766 1.91e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1284 K05681 - gmx:100798801 1266.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1284 13 11535702 11549291 Lal13g1284 13 11535702 11549291 ECH
Lal1g1720 1 19640146 19650582 Lal13g1284 13 11535702 11549291 PCT
Lal13g1284 13 11535702 11549291 Lal1g1720 1 19640146 19650582 PCT