Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1228 ATGGCTTCAAGATTTTGGACCCAGGGTGGTAGTGACTCTGAGGAGGAGGAGAGTGATTATGATGAGGAGGTTGTGGCAACAGCGGGTGAATCTGCTAGTCAAGCCGTTGCAAGCAAATACATGGATAATGGCAGCGATAGTGATGACTCAGATGCCCAAAAGCGTACTGTCAGGTCAGCAAAAGACAAACGTTTTGATGAGATGTCATCGACTGTTGATCAGATGAAGAATGCCATGAAGATTAATGACTGGGTAAGTTTACAGGAGAGCTTTGACAAGGTCAACAAGCAACTTGAGAAAGTCATGCGTGTTATTGAATCTGCAAAGGTTCCCACTCTTTATATAAAGGCACTTGTGATGTTGGAAGACTTCTTAGCTCAGGCTTTGGCAAATAAGGATGCCAAAAAGAAAATGAGTAGCAGCAATGCTAAAGCTTTGAACTCAATGAAGCAGAAATTGAAGAAGAATAATAAGCAGTATGAGGATTTGATTAATAAATGTAGGGAGAATCCCGAGAGTGAGGAGGAAAAAGGTGAAGAGGAGACAGAGGAAGAGTATGAAACTGATGATGAGATTATTGAACCAGAACAGCTAAAAAAGAAAGAAGCAGTATCAGATTCCGAAGGTTCTCGGTATGAAGACGAGAAGCAAGATCCCAATGAAACACCATGGGATCAAAAACTTAGCAAGAAAGACAGGCTTTTGGATAGGCAATTTATGAAAGACCCAAGTGAGATCACTTGGGATATAGTTAACAAGAAGTTCAAAGAGGTTGTGGCAGCTAGGGGTAAGAAGGGAACCGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCCTAACAAAAGTTGCTAAAACACCTGCACAGAAACTGGAAATTCTTTTTAGTCTAGTTTCTGCTCAGTTTGATGTTAATCCAGGTCTTAGTGGGCATATGCCAATTAAAGTGTGGAAAAAATGCGTACAGAACATGCTAGTCATTCTCGATATTCTAGTGCTGTACCCAAACATAGTAGTTGATGATTCAGTGGAGCCAGATGAGAATGAAACTCAGAAGGGGGTGGGCTATAATGGACCCATTCACATTTGGGGTAACTTAGTTGCATTCTTAGAAAGAATAGATACTGAGTTTTTCAAGAGCCTTCAGTGCATAGATCCTCATACTTCTGAGTATGTTGAGAGACTGAGGGATGAACCCACATTTCTTGTTCTTGCTCAGAATGTCCAGGAATATCTCGTAAGGGTTGGGGATATGAAAGCAGCTTCTAAGGTAGCTTTGAGGCGGGTGGAACTCATTTACTACAAACCACAGGAGGTTTACGATGCCATGAGAAAATTGGCTGAGCTGACTGTAGATGGGGGTGTTGGAGGGGATGCTAGTGAGGAATCTAAAGGATTTGAAGAAACAAGGACACCTACTGCATTTGTTGTTACTCCTGAGCTTGTGCCTAGGAGCCCCACTTTTCCTGAGAATAGCAGGGCCCTAATGGATATATTGGTATCCCTAATATATAAATATGGTGATGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATAAATCACCATGCTCTGCTCGATGAGTTCTCAGTAGCACGTGATCTGCTGCTTATGAGCCATTTGCAGGACAGCGTTCAACAAATGGACATTTCAACACAAATACTTTTTAACAGGACTATGGCTCAGCTGGGTCTATGTGCTTTTCGGGTTGGATTGATTTCTGAGTCACATGGCTGTCTCTCTGAACTTTATTCTGGTGGCAGGGTGAGGGAATTACTTGCTCAAGGTGTGTCACAAAGTCGTTTTTATGAGAAGACCCCTGAACAGGAAAGGTTGGAAAGGAGGCGTCAAATGCCATATCATATGCACATAAACCTTGAGCTCCTGGAGGCAGTGCATCTTATTTGTGCTATGTTGCTGGAAGTCCCTAATATGGCTGCCAATGTTCATGATGCAAAGCGCAAGGTTATCAGCAAGACTTTCCGTCGTTTGCTTGAGGTTAGCGAGAAACAAACATTCACCGGTCCACCTGAAAATGTCAGAGATCATGTCATGGCTGCCACGAGGGTTCTTACCAAGGGAGACTTCCACAAGGCTTTTGATATCATTCAGTCTCTTGGTGTATGGAAATTCGTTAGGAACCGTGATGCTGCACTTGAAATGCTGAAGGACCAAATCAAGGAGGAGGCACTGAGGACATACCTCTTTACCTTCTCTTCATCTTATGATTCTTTGAGCCTGGATCAGCTCACAAAAATGTTTGATCTCTCTGTTTCTCGCACTCATAGTATTGTTAGTCGAATGATGATCAACGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTATTTTCCAGGATGTTGAGCACTCAAGGCTGCAGGGTTTGGCATTCCAGTTGACAGAGAAATTATCTATCCTTTCTGAGAGTAATGAAAGAGCGACTGAGGCAAGGATAGGCGGTGGTGGATTGGATCTGCCTCTAAGGCGACGCGATAACCAGGACTATGCTGCTGCTGCTGCCAGTGGAACTGCCACTTCAGGTGGTAGGTGGCAAGAGTTGTCCTTTTCTCAGCAAAGACAAGGAGGAGGTGGTGGTCGTGGAGGATATAATACTGGTCGTGGGAGGCAATCGGCATTTGGCCAAGCAGCTGGGAGTGGCTATTCGAGGGACCGAACCGGACGAGTAACAGGTGCAGGTTATCAGAGGTCTGCTCATAGTGGATCAGCACTGAGAGGATCCCAGGTGGATGCTTCTACTCGCATGGTTAGCCTAAAGGGAGTTCGGGCTTGA 2796 0.4453 MASRFWTQGGSDSEEEESDYDEEVVATAGESASQAVASKYMDNGSDSDDSDAQKRTVRSAKDKRFDEMSSTVDQMKNAMKINDWVSLQESFDKVNKQLEKVMRVIESAKVPTLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKCRENPESEEEKGEEETEEEYETDDEIIEPEQLKKKEAVSDSEGSRYEDEKQDPNETPWDQKLSKKDRLLDRQFMKDPSEITWDIVNKKFKEVVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSLVSAQFDVNPGLSGHMPIKVWKKCVQNMLVILDILVLYPNIVVDDSVEPDENETQKGVGYNGPIHIWGNLVAFLERIDTEFFKSLQCIDPHTSEYVERLRDEPTFLVLAQNVQEYLVRVGDMKAASKVALRRVELIYYKPQEVYDAMRKLAELTVDGGVGGDASEESKGFEETRTPTAFVVTPELVPRSPTFPENSRALMDILVSLIYKYGDERTKARAMLCDINHHALLDEFSVARDLLLMSHLQDSVQQMDISTQILFNRTMAQLGLCAFRVGLISESHGCLSELYSGGRVRELLAQGVSQSRFYEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANVHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRVLTKGDFHKAFDIIQSLGVWKFVRNRDAALEMLKDQIKEEALRTYLFTFSSSYDSLSLDQLTKMFDLSVSRTHSIVSRMMINEELHASWDQPTGCIIFQDVEHSRLQGLAFQLTEKLSILSESNERATEARIGGGGLDLPLRRRDNQDYAAAAASGTATSGGRWQELSFSQQRQGGGGGRGGYNTGRGRQSAFGQAAGSGYSRDRTGRVTGAGYQRSAHSGSALRGSQVDASTRMVSLKGVRA 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1228 931 Gene3D - 722 795 IPR036388 -
Lal13g1228 931 MobiDBLite consensus disorder prediction 840 866 - -
Lal13g1228 931 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 870 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lal13g1228 931 MobiDBLite consensus disorder prediction 1 69 - -
Lal13g1228 931 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 930 - -
Lal13g1228 931 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 720 808 - -
Lal13g1228 931 MobiDBLite consensus disorder prediction 133 229 - -
Lal13g1228 931 MobiDBLite consensus disorder prediction 174 192 - -
Lal13g1228 931 Coils Coil 143 170 - -
Lal13g1228 931 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 45 651 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lal13g1228 931 MobiDBLite consensus disorder prediction 134 153 - -
Lal13g1228 931 MobiDBLite consensus disorder prediction 154 173 - -
Lal13g1228 931 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 930 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lal13g1228 931 SUPERFAMILY "Winged helix" DNA-binding domain 716 790 IPR036390 -
Lal13g1228 931 MobiDBLite consensus disorder prediction 44 69 - -
Lal13g1228 931 Pfam PCI domain 659 787 IPR000717 -
Lal13g1228 931 MobiDBLite consensus disorder prediction 901 922 - -
Lal13g1228 931 MobiDBLite consensus disorder prediction 838 931 - -
Lal13g1228 931 SMART PINT_4 720 808 IPR000717 -
Lal13g1228 931 MobiDBLite consensus disorder prediction 193 229 - -
Lal13g1228 931 ProSiteProfiles PCI domain profile. 619 791 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1228 Lal-Chr13 10613357 10618720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1228 1 931 Eukaryotic Initiation Factors Gene Family AT3G56150 69.486 0.0 1211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1228 K03252 - gmx:100781967 1452.19