Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1227 ATGAGGGGTGGAAGCTACAGTTATAGTCCGTCACCATCTCCAAGGAGGTACAGCCGAAGAGGGCGAAGTCCAAGCCCGAGGGGGCGTTATCGCGGCAGTGATAGGGATTTACCAACAAGTCTACTTGTTCGGAACCTCCATAAAGATTGCAGGGTGGAAGATTTAAGGGCTCCATTTAACCACTTTGGTCCTCTCAAGGATGTGTACCTGCCTCGAGATTATTATACTGGGGAACCTCGTGGTTTTGGGTTTGTTCAATATGTTGATCCAGATGATGCTGCAGATGCAAAATATCATATGGATGGTCAAATTCTTCTTGGTCGTGAGTTAACTGTCGTGTTTGCAGAGGAAAATAGAAAGAAGCCTGCAGAAATGAGAGCAAGAGAACGTGGAAGTATTTCTGTATTCAATATAGGTCATATGATTATAGAAGATCTCCACGCCGTTATTCCCGTTCACCGCGGTATGGGCAATATTCACGTAGTCCAGGCTATTCACCTTCTCCACGAGGAAGGCATTATTCCAGGTCCATCTCACCAAGAGACAGAAGGTATAGGGGTAGATCATACTCCAGATCACCTTATGGATCGAGAAGCCGCAGTCGAAGCAGGAGTTACAGTAGGGGTTATAGCAGGAGCGTAA 642 0.4642 MRGGSYSYSPSPSPRRYSRRGRSPSPRGRYRGSDRDLPTSLLVRNLHKDCRVEDLRAPFNHFGPLKDVYLPRDYYTGEPRGFGFVQYVDPDDAADAKYHMDGQILLGRELTVVFAEENRKKPAEMRARERGSISVFNIGHMIIEDLHAVIPVHRGMGNIHVVQAIHLLHEEGIIPGPSHQETEGIGVDHTPDHLMDREAAVEAGVTVGVIAGA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1227 213 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 132 - -
Lal13g1227 213 MobiDBLite consensus disorder prediction 1 36 - -
Lal13g1227 213 SUPERFAMILY RNA-binding domain, RBD 12 128 IPR035979 GO:0003676
Lal13g1227 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Lal13g1227 213 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL33 1 132 - -
Lal13g1227 213 SMART rrm1_1 40 113 IPR000504 GO:0003723
Lal13g1227 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Lal13g1227 213 Gene3D - 31 137 IPR012677 -
Lal13g1227 213 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1227 Lal-Chr13 10592574 10599096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1227 39 128 Eukaryotic Initiation Factors Gene Family AT4G34110 30.000 4.65e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1227 K12900 - gmx:100816913 198.364