Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1217 ATGGCAACTTCATGGGCTGATTCTGCTGACAATTCAGCCAATGCCTCTGCGCGACCGGCTTATCTTCCTCCACATCTTCGCAACCGGACATTGTCTTCAGAACCCCCAGCTGCTGCAACATCCTACTTGTCTTCATTGGCGGCTAGTGATCGTGTGAATTATGGCGGTCTGGCTGCTGGTTTTCATGGAGGTATTTCCTCTAAACCGGATCTCGGGCTGCACGGATATGGTTCTAATGTTCAGACTGGTAATGGTGGCGGTGGTTGGAATGGTAGAGGGGTAGGGAGGGACCGTGGAAGGCGTGAGGTGAACCCTTTTGAGAATGATGAACCTGTGGATCAATTTTCTCATGAGCAAGAAAACACAGGTATTAACTTTGATGCTTATGATGATATCCCTGTGGAGACTAGTGGGGGCAATGTGCCTCCACCTGTCAATACATTCGCGGAAATAGACTTGGGTGAGGCGTTGAATCAAAACATACAGAGGTGCAAGTATGTCAAACCAACTCCGGTTCAGAGGTATGCCATACCGATTTCTCTCGCGGGGAGAGATTTGATGGCATGTGCTCAGACAGGGTCTGGAAAGACAGCTGCCTTTTGCTTTCCTATTATAAGTGGAATAATGAGGGAGCAGTCTGTTCAAAGACCACGTGTAGCACGAACTGCTTTCCCTATGGCTCTTATCCTCTCCCCTACTCGAGAGCTTTCATGCCAGATACATGATGAGGCCAAAAAGTTTTCTTATCAAACTGGTGTCAAGGTTGTTGTTGCTTATGGAGGAGCACCAATCAACCAACAGTTGCGGGAGCTGGAGAGAGGAGTTGATATTCTGGTAGCAACTCCAGGACGATTGGTGGATTTGCTTGAGAGGGCTAGGGTGTCACTGCAAATGATAAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAGATGGACATGCCTCCTCCTGGCATGAGACAGACTTTGCTGTTTAGTGCCACATTTCCCAAAGAGATACAGGGACTTGCATCAGATTTTCTTTCAAATTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACTGATCTAATTTCTCAAAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTCCATGCTCAGAGAGAAAATGAAACTAATGGCAAGCAATTTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAGCACTGTTTGTGTGTTAATGGATTTCCTGCAACTAGCATTCATGGTGACAGAACACAGCAAGAAAGAGAACTAGCATTGAGGTCATTCAAGAGTGGAAACACACCAATTTTAGTGGCCACAGATGTTGCAGCACGTGGCCTTGATATTCCACGGGTAGCACATGTGGTAAATTTTGATCTTCCTAATGACATCGATGATTATGTGCATCGGATAGGAAGAACAGGGCGAGCTGGGAAAATGGGATTAGCAACAGCCTTCTTCAATGACAGTAATTTGTCCATGGCCAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGTTTGGCTCACACGCTATGCAGCAAGGGCTTCTTACGGTGGTGGCAACAGAAACAGGCGGTCAGGGGGAGCCCGCTATGGTGGCCGCGACTTTAGGAAGGAGGGCTCATTTAATAAAGGAGCAGATTACAATGGTGGAGCAAGTGGGTATGGGGTTCCTGCCAATTATTGCGGAGGGTATGGTCAAGGTGTGACTAGTGCTTGGGATTAG 1806 0.4668 MATSWADSADNSANASARPAYLPPHLRNRTLSSEPPAAATSYLSSLAASDRVNYGGLAAGFHGGISSKPDLGLHGYGSNVQTGNGGGGWNGRGVGRDRGRREVNPFENDEPVDQFSHEQENTGINFDAYDDIPVETSGGNVPPPVNTFAEIDLGEALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREQSVQRPRVARTAFPMALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQGLASDFLSNYVFLAVGRVGSSTDLISQRVEYVLESDKRSHLMDLLHAQRENETNGKQFLTLVFVETKKGADALEHCLCVNGFPATSIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPVWLTRYAARASYGGGNRNRRSGGARYGGRDFRKEGSFNKGADYNGGASGYGVPANYCGGYGQGVTSAWD 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1217 601 SMART ultradead3 165 376 IPR014001 -
Lal13g1217 601 Pfam DEAD/DEAH box helicase 170 348 IPR011545 GO:0003676|GO:0005524
Lal13g1217 601 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 388 539 IPR001650 -
Lal13g1217 601 Pfam Helicase conserved C-terminal domain 384 500 IPR001650 -
Lal13g1217 601 MobiDBLite consensus disorder prediction 1 15 - -
Lal13g1217 601 SMART helicmild6 419 500 IPR001650 -
Lal13g1217 601 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 146 174 IPR014014 GO:0003724
Lal13g1217 601 MobiDBLite consensus disorder prediction 1 33 - -
Lal13g1217 601 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 177 361 IPR014001 -
Lal13g1217 601 CDD DEADc_DDX3_DDX4 147 367 IPR044763 GO:0003724|GO:0005524
Lal13g1217 601 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 38 573 - -
Lal13g1217 601 Gene3D - 364 544 IPR027417 -
Lal13g1217 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 517 IPR027417 -
Lal13g1217 601 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 38 573 - -
Lal13g1217 601 CDD SF2_C_DEAD 373 509 - -
Lal13g1217 601 Gene3D - 102 363 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1217 Lal-Chr13 10526036 10533447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1217 130 533 Eukaryotic Initiation Factors Gene Family AT3G19760 31.111 1.35e-62 210
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1217 13 10526036 10533447 Lal24g1104 24 11475170 11483037 LSH