Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1144 ATGGCTGCAGCGGCGCGTCCACTCGTCACCGTCCAATCCCTCGACGGCGATATTGCTACTGACTCCATCCCCACCGTTCCCCTCCCTGACGTCATGAAATCCTCCATCCGCCCCGACATCGTCAACTACGTCCACTCCAACATCTCCAAAAACTCTCGTCAGCCTTACGCCGTCTCCCGCCGTGCCGGCCACCAGACCTCCGCCGAGTCATGGGGAACTGGTCGTGCTGTCTCCCGTATCCCCCGTGTCTCCGGTGGTGGAACCCACCGCGCCGGCCAGGCTGCCTTTGGAAACATGTGTCGCGGTGGACGCATGTTTGCGCCGACCAGGATCTGGCGCCGATGGCACCGTAAGATCAATATCAATCAGAAACGATACGCTGTCGTTTCAGCTATAGCTGCTTCCGCTATTCCTTCCCTTGTTCTGGCTCGAGGCCACCGCATCGAATCTGTCCCTGAGCTTCCACTCGTTGTCAGTGACACCGCGGAAGGTGTCGAGAAAACGAAGGAGGCAATCAAAGTCCTTAAACAGATCGGAGCATTTTCTGATGCGGAGAAGGCGAAAGACAGCCGTGGAATCCGCCCTGGCAAGGGAAAGATGAGGAATCGTCGCTACATTTCGCGAAAAGGTCCTCTAATTGTTTATGGAACGGAAGGCGCGAAAGCAGTTAAGGCTTTTCGCAATGTACCTGGTGTTGAGATTGCCAATGTTGAGAGGTTGAATTTGTTGAAGCTCGCGCCAGGTGGACACCTTGGAAGGTTTGTGGTTTGGACCAAATCGGCTTTTGAAAAGCTCGATTTGATTTATGGCTCATTTGATAAGGCTGCTGAGAAGAAGAAGGGCTATGTGTTGCCGAGGTCGAAGATGGTGAATGCTGATTTGGCTAGGATCATTAACTCTGATGAGGTGCAATCTGTTGTGAAACCGATCAAGAAGGAGGTGAAGAGGACCTCGATCAAGAAGAATCCATTGAAGAATCTGAATGTTTTGTTGAAGCTGAATCCTTATGCTAAGACTGCTAAGAGAATGGCTTTGCTTGCTGAGGAGCAGAGAGTTAAGGCTAAGAAGGAAAAGCTTGATAAGAAGAGGAATGTTCCTAAGGAGGAAGCTTCTGCAATCAGAGCTGCAGGGAAGGCATGGTATCAAACTATGGTGTCTGACTCTGATTACGCAGAATTTGACAACTTTTCTAAGTGGTTGGGCGTATCACAGTGA 1215 0.5111 MAAAARPLVTVQSLDGDIATDSIPTVPLPDVMKSSIRPDIVNYVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVSGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKININQKRYAVVSAIAASAIPSLVLARGHRIESVPELPLVVSDTAEGVEKTKEAIKVLKQIGAFSDAEKAKDSRGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNVPGVEIANVERLNLLKLAPGGHLGRFVVWTKSAFEKLDLIYGSFDKAAEKKKGYVLPRSKMVNADLARIINSDEVQSVVKPIKKEVKRTSIKKNPLKNLNVLLKLNPYAKTAKRMALLAEEQRVKAKKEKLDKKRNVPKEEASAIRAAGKAWYQTMVSDSDYAEFDNFSKWLGVSQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1144 404 Pfam Ribosomal protein L4/L1 family 26 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Lal13g1144 404 PANTHER BNAC03G35890D PROTEIN 2 404 - -
Lal13g1144 404 Coils Coil 345 365 - -
Lal13g1144 404 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Lal13g1144 404 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lal13g1144 404 SUPERFAMILY Ribosomal protein L4 9 266 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lal13g1144 404 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Lal13g1144 404 MobiDBLite consensus disorder prediction 54 74 - -
Lal13g1144 404 MobiDBLite consensus disorder prediction 54 73 - -
Lal13g1144 404 PANTHER 60S RIBOSOMAL PROTEIN L4 2 404 IPR045240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1144 Lal-Chr13 8760925 8768348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1144 2 404 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 80.397 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1144 K02930 - gmx:100779764 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1144 13 8760925 8768348 Lal13g1144 13 8760925 8768348 ECH
Lal13g1144 13 8760925 8768348 Lal24g0853 24 6904232 6906805 LSH
Lal1g1833 1 20646755 20649006 Lal13g1144 13 8760925 8768348 PCT
Lal20g0078 20 516018 518033 Lal13g1144 13 8760925 8768348 PCT
Lal13g1144 13 8760925 8768348 Lal1g1833 1 20646755 20649006 PCT
Lal13g1144 13 8760925 8768348 Lal20g0078 20 516018 518033 PCT