Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1143 ATGCCACCGAAGCAGCAATCAAAAGCAGATATAGCGAAGAAACAGAAGCTTGTAGAAGACAAAACCTTCGGTCTCAAGAACAAAAACAAAAGCAAAAATGTTCAAAAATATGTTCAGAATCTCAAACAATCCATCCCGCAACCCGATGCTGCAAAAATCGCTGCTAAGAAAAAGAAGGAGGAAGAGAAAGCCAAGGAAAAGGAGCTAAATGATTTATTCAAAATCGCTGTTAGTCAGCCTAAAGTCCCAGTTGGTGTTGATCCCAAGTCCATATTATGTGAGTTTTTTAAAGTGGGGCAGTGTACCAAGGGATTCAAATGCAAATTCTCACATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGCGATAAGCGCGACGATGAAACAATGGAGGATTGGGATCAAGAGACATTGGAGAAGGTGGTAGAGTCAAAGAAAAATGAGTATAATCAGAACAAACCTACTGACATAGTCTGTAAACACTTTTTGGACGCAGTAGAGAAGAAGCAATATGGTTGGTTTTGGGTCTGCCCTAATGGTGGTAAAAACTGCCACTATAGACATGCACTTCCCCCTGGATATATTTTAAAATCTCAAATGAAGGCTCTGTTAGAGGAAGAAAGTGATAAGATAACAATTGAAGAGGAGATTGAAAATCAGCGTGCCAAAGTGGCAACTACAACTCCTATGACTCCCGATTTATTCCATCAATGGAAGAAGAAGAAGATAGAAGAGAGAGATGCCAATTTGGCTGCACAACAGGCAGATAGGGCTAAGCATGACCGCATGAGTGGTCGTGAGCTATTTTTGTCAGATGCTACCTTGTTTGTGGATGATGATGAAGCATATGAGAAGTACCACAGAGAACCAGAATCTGATAACACTGACCAGAAAGCAAATGGGAATTCTGCTGAACATGGTCCCAGTACCTCAGCAACAGTTGGTTCTGATGCTGATGATGACGACGATGACGATGAATTGGACATGGATGAGTTGAATGAACTGGAAGCAAGTTTATCAAAGACTTCAATCCAAATAAAAGAGCCAGGAGCTGAAGCTTAA 1074 0.4078 MPPKQQSKADIAKKQKLVEDKTFGLKNKNKSKNVQKYVQNLKQSIPQPDAAKIAAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFFKVGQCTKGFKCKFSHDLNVQRKGEKIDIYSDKRDDETMEDWDQETLEKVVESKKNEYNQNKPTDIVCKHFLDAVEKKQYGWFWVCPNGGKNCHYRHALPPGYILKSQMKALLEEESDKITIEEEIENQRAKVATTTPMTPDLFHQWKKKKIEERDANLAAQQADRAKHDRMSGRELFLSDATLFVDDDEAYEKYHREPESDNTDQKANGNSAEHGPSTSATVGSDADDDDDDDELDMDELNELEASLSKTSIQIKEPGAEA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1143 357 Pfam DRG Family Regulatory Proteins, Tma46 214 295 IPR032378 -
Lal13g1143 357 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 356 - -
Lal13g1143 357 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 356 - -
Lal13g1143 357 MobiDBLite consensus disorder prediction 320 337 - -
Lal13g1143 357 Coils Coil 207 227 - -
Lal13g1143 357 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Lal13g1143 357 ProSiteProfiles Zinc finger C3H1-type profile. 157 195 IPR000571 GO:0046872
Lal13g1143 357 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Lal13g1143 357 Coils Coil 50 72 - -
Lal13g1143 357 MobiDBLite consensus disorder prediction 300 319 - -
Lal13g1143 357 Gene3D - 86 202 - -
Lal13g1143 357 MobiDBLite consensus disorder prediction 289 357 - -
Lal13g1143 357 Gene3D - 203 278 - -
Lal13g1143 357 SMART c3hfinal6 157 194 IPR000571 GO:0046872
Lal13g1143 357 SMART c3hfinal6 87 113 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1143 Lal-Chr13 8748225 8753059 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal13g1143 DFRP_C 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1143 - - gmx:100806617 602.823