Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1141 ATGACAAGGGGTGCCCTGTTGAGTGTTGATGGCGACGATAAAGATATGAAAGAAGTGTCTCAGTGCTTACAGAATGAGAAGACCTTTAAAGACGAAGTTGATGGCGAGGGGAACAGTTTACTAGGGGATGATGGAGTGAAATGTAATGGAGTAGCTGAAGAAGTCAAGGTTGTTGGACAGGGAGGGACTCTGGAGTGCTCTTCTGTCCAGCAGCATATACCACAGCCACAGCCTCAGGGGGCAATAATTTGTTGGGAAAGGTTTTTACATATTAGATCTCTTAAGGTCTTGCTTGTGGAGTATGATGACTGTACTCGCCTTGTTGTCACTGCACTCCTTCGAAATTGTAGTTATGAAGTTATTGAAGCAGCAAACGGATTGCAAGCTTGGAAGATATTGGAGGATTTAACCAATCATGTTGATCTCATTTTAACTGAGGTTGCAATGCCTGGCTTATCTGGCATTGGTCTCCTATACAAGATTATGAGCCACAAAACACGGAAAAACGTTCCAGTAATTATGATGTCTTCTCATGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGGGCTGTTGACTTTCTTGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGGAGATGCCATAGTTCTAGTGGTAGTGGGAGTGAAAGTGGCACACAAACCCAAAAGTCTGTAAAATCAAAGAGCCTTGAGAAGTCTGATAATAATTCTGGAAGCAATGACGAAGATGATGATGCAAGTGAAGGCCTGAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGCTCTTGGACTAAACAAGCTGTGGAAGTTGATAGTCCTGGACCTACTTTCCAGTGGGATCAGATAGCCGAATGTCCTGATAGCACTTGTGCCCAAGTTGTTCACTCAAATGCTGAAATTTGCAGTAACGAAGTAGTTCCTCTAGCCATAAAGGAGTCTACGGAACAAAAGGAACAACTTGGTTCAAAACATAGCCAAGCTCAAGATGTAGGCCCCTCTAAATTCAATGAGAAAATTAGTAGAAGGCTGGACCTTAATTGTGAGAACCAATCTAGCGAGCCAAGGTGCAAAGGCATGTCAGTGTCTGATGCCATTCCTAGAACTTTTGATTCTCAGATGCATAGTGGAGAATTTGAGGTCCTAGAGAGAAGACCGAAGTACTCAGATGTTGAAAATAAAGGTACTAATAATGATGAAGAATTGCCATCTCTTGAGCTTAGTTTGAAGAGGCTTAGAGGAGTTAAAGATGCTGGTATTGCAGTTCAGGATGAACGAAATGTTTTAAGACGTTCTGACCTTTCTGCCTTCTCAAGGTATAATGCAGCCTCTAACACTAAGAAGTCTCCCACTGGATATGTTGGAAGCAATTCTCCACATGACAATAGCTTAAAAGTCACAAAGAAAGATTTGTCTCGTGACATTCAGTCTCATTCTAGTGGCAATCCTCCTAACCAGAACTCAAATGGTGCTAGCAATAACATTGATATGGGTTCCACCACTGATAATAATGCTTTTACTAAATCTGCTGTTATAAGGGGGTCAGCAGTGGCATCAACAACCAAGTGTCTGTATCAATCATCAGCTTTCCAGCCTCTAAAGAACAAACTTATGTGTGCTTCTCAACAAGTAGTATTACATGATACTGAAGATAAGATTGCACCAACACTGGCACCGACTAGAGTAGACATCCATAAGGATTCTGAAACTAAGGACTTTTGTCACCATTATGAAAGCCATAACTGCCTTGCTAACAACATGCAGCACCAGCTGCCACCCGATCATCGTGCTGAGTTATTTAAGAAAATGGCTGCTGCTGCTCCACATTTTGGGTCATCAAATGTGGTCGAAGTGCTAGTTGAAGGTAATGTTGGAAATTACAGTGTCAATAGAAGTGCTTCGGGCAGCAACAACGGAAGCAATGGACAAAATGGGTGCAGCACAGCTTTTAATGTTGGAGGGACAAACATAGAAAATAACAATGGACCCACTGGGAATAGTGGTAGCGGTGATGGTAGTGCGAACAGAGTAGATCAGAACAAGGTTTCTCAAAGGGAAGCAGCTTTGACTAAATTTCGCGAGAAGAGAAAGGAAAGATGCTTTCATAAAAAGGTTCGATATCAGAGCAGAAAGAAATTAGCTGAGCAACGGCCACGATTTCGTGGACAATTTGTGCGACAGCCCTCAAATGGAAGTGCAAGTGAGGCAACAGATAGCTGA 2253 0.4243 MTRGALLSVDGDDKDMKEVSQCLQNEKTFKDEVDGEGNSLLGDDGVKCNGVAEEVKVVGQGGTLECSSVQQHIPQPQPQGAIICWERFLHIRSLKVLLVEYDDCTRLVVTALLRNCSYEVIEAANGLQAWKILEDLTNHVDLILTEVAMPGLSGIGLLYKIMSHKTRKNVPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKSDNNSGSNDEDDDASEGLNNGDGSDNGSGTQSSWTKQAVEVDSPGPTFQWDQIAECPDSTCAQVVHSNAEICSNEVVPLAIKESTEQKEQLGSKHSQAQDVGPSKFNEKISRRLDLNCENQSSEPRCKGMSVSDAIPRTFDSQMHSGEFEVLERRPKYSDVENKGTNNDEELPSLELSLKRLRGVKDAGIAVQDERNVLRRSDLSAFSRYNAASNTKKSPTGYVGSNSPHDNSLKVTKKDLSRDIQSHSSGNPPNQNSNGASNNIDMGSTTDNNAFTKSAVIRGSAVASTTKCLYQSSAFQPLKNKLMCASQQVVLHDTEDKIAPTLAPTRVDIHKDSETKDFCHHYESHNCLANNMQHQLPPDHRAELFKKMAAAAPHFGSSNVVEVLVEGNVGNYSVNRSASGSNNGSNGQNGCSTAFNVGGTNIENNNGPTGNSGSGDGSANRVDQNKVSQREAALTKFREKRKERCFHKKVRYQSRKKLAEQRPRFRGQFVRQPSNGSASEATDS 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1141 750 MobiDBLite consensus disorder prediction 481 511 - -
Lal13g1141 750 ProSiteProfiles Response regulatory domain profile. 95 213 IPR001789 GO:0000160
Lal13g1141 750 MobiDBLite consensus disorder prediction 326 345 - -
Lal13g1141 750 MobiDBLite consensus disorder prediction 645 694 - -
Lal13g1141 750 MobiDBLite consensus disorder prediction 456 473 - -
Lal13g1141 750 PANTHER TWO-COMPONENT RESPONSE REGULATOR 334 727 IPR045279 GO:0009736
Lal13g1141 750 PANTHER TWO-COMPONENT RESPONSE REGULATOR 41 332 IPR045279 GO:0009736
Lal13g1141 750 MobiDBLite consensus disorder prediction 487 511 - -
Lal13g1141 750 MobiDBLite consensus disorder prediction 719 750 - -
Lal13g1141 750 CDD psREC_PRR 96 199 - -
Lal13g1141 750 Pfam CCT motif 696 738 IPR010402 GO:0005515
Lal13g1141 750 SMART REC_2 94 209 IPR001789 GO:0000160
Lal13g1141 750 MobiDBLite consensus disorder prediction 260 277 - -
Lal13g1141 750 SUPERFAMILY CheY-like 92 218 IPR011006 -
Lal13g1141 750 ProSiteProfiles CCT domain profile. 696 738 IPR010402 GO:0005515
Lal13g1141 750 MobiDBLite consensus disorder prediction 734 750 - -
Lal13g1141 750 Pfam Response regulator receiver domain 96 207 IPR001789 GO:0000160
Lal13g1141 750 MobiDBLite consensus disorder prediction 456 475 - -
Lal13g1141 750 Gene3D - 93 254 - -
Lal13g1141 750 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 334 727 - -
Lal13g1141 750 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 41 332 - -
Lal13g1141 750 MobiDBLite consensus disorder prediction 218 277 - -
Lal13g1141 750 MobiDBLite consensus disorder prediction 218 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1141 Lal-Chr13 8727706 8739135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1141 170 738 Response Regulator Gene Family AT5G02810 46.252 6.33e-111 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lal13g1141 Response_reg 1.7e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1141 K12129 - gmx:100796933 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1141 13 8727706 8739135 Lal13g1141 13 8727706 8739135 ECH
Lal13g1141 13 8727706 8739135 Lal1g0354 1 2129974 2137971 ECH