Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1140 ATGGGTTGGAATCTATGTTCTGGAAATTCAAACCCTAAGAAGAAAATTGTGGAAGTGCAGGACAACATTGTTGATCCAATAAGAGCCACCCCAGAGAAACTGAAGAGGAATTACTCCATGAATTCCAAAGATTCCTATAAAAGTGGGAGCACTGATCATATTTCTGCACAGACATTCTCGTTCCGTGAATTGGCAGATGCAGCTAGAAATTTTAAAGCAGAATGTCTTATAGGCAAGGGCGGCTTCGGTAGAGTTTACAAAGGACATTTGGAAAGTATTAATCAGATGCGTCTGTATCATTGTGATTTGGTGTCACAGCACAATTGCATTGTGATGTGGTTGCAGTGGTCACTGGCTCACCGCAACTGCGATATTGCGGCCACATCACGTGATGTGGTTGTCGCAATTAAGCGACTTGATCTAAATGGGCTTCAAGGGAATAGAGAATTCCTTGTCGAAGTATTGATGCTAAGTCTTCTTCACCACACCAACCTTGTCAACATGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTTTAGTTTATGAATATATGTCATTAGGATCTTTGGAAGACCACTTACATGATATTGCTCCTGGAAAGAAGCGACTTGACTGGAACACAAGAATGAAAATAGCTGCTGGGGCGGCACAGGGATTGGAATATCTACATGACAAAGCTAACCCTCCTGTCATATACCGAGATATAAAGTGCTCCAACATTTTGCTTGGCGAAGGGTATCACCCAAAGTTATCCGATTTTGGTTTGGCTAAACTTGGCCCGGTCGGGGAAAAGACCCATGTATCAACAAGGGTTATGGGCAGCTACGGATATTGTGCTCCTGAGTATGCAATGACAGGCCAACTGACTCTAAAATCGGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACCGGAAGGAAGGCGATTGACAATTCTAAGTCTGCAAGAGAGCAGAATCTTGTTGCATGGGCTAGACCGTTGTTGAAAGAACGTAGAAATTTTTCACAAATGGCCGATCCAATGCTGCAAGGTCAATATCCGGCAAGAGGACTATACCAGGCACTTGCTGTTGCTGCAATGTGTGTTCAGGAGCAGGCCAACATGCGTCCCCTTATAGCTGATGTTGCCAAAGCTTTTAGTTACCTTGCCACACAAAGATACGACACCGATACACAGATAGTACAAAGCTCTCGCCTTGCTCCCGGTACTCCTCCTAGAACCAAGAAGGGATAA 1242 0.4364 MGWNLCSGNSNPKKKIVEVQDNIVDPIRATPEKLKRNYSMNSKDSYKSGSTDHISAQTFSFRELADAARNFKAECLIGKGGFGRVYKGHLESINQMRLYHCDLVSQHNCIVMWLQWSLAHRNCDIAATSRDVVVAIKRLDLNGLQGNREFLVEVLMLSLLHHTNLVNMIGYCADGDQRLLVYEYMSLGSLEDHLHDIAPGKKRLDWNTRMKIAAGAAQGLEYLHDKANPPVIYRDIKCSNILLGEGYHPKLSDFGLAKLGPVGEKTHVSTRVMGSYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAREQNLVAWARPLLKERRNFSQMADPMLQGQYPARGLYQALAVAAMCVQEQANMRPLIADVAKAFSYLATQRYDTDTQIVQSSRLAPGTPPRTKKG 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1140 413 Gene3D Transferase(Phosphotransferase) domain 1 186 402 - -
Lal13g1140 413 Gene3D Phosphorylase Kinase; domain 1 41 111 - -
Lal13g1140 413 Pfam Protein tyrosine and serine/threonine kinase 76 329 IPR001245 GO:0004672|GO:0006468
Lal13g1140 413 ProSiteProfiles Protein kinase domain profile. 71 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1140 413 PANTHER OS07G0668900 PROTEIN 1 96 - -
Lal13g1140 413 PANTHER OS07G0668900 PROTEIN 129 412 - -
Lal13g1140 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Lal13g1140 413 SUPERFAMILY Protein kinase-like (PK-like) 57 391 IPR011009 -
Lal13g1140 413 SMART serkin_6 71 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1140 413 Gene3D Phosphorylase Kinase; domain 1 125 185 - -
Lal13g1140 413 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 129 412 - -
Lal13g1140 413 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 96 - -
Lal13g1140 413 CDD STKc_IRAK 77 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1140 Lal-Chr13 8722915 8726007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1140 25 387 Glycoside Hydrolase AT3G07070 58.678 1.62e-152 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lal13g1140 PK_Tyr_Ser-Thr 3.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1140 - - lang:109335004 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1140 13 8722915 8726007 Lal13g1140 13 8722915 8726007 ECH
Lal13g1140 13 8722915 8726007 Lal25g0162 25 1035733 1039466 ECH
Lal13g1140 13 8722915 8726007 Lal10g1247 10 18730549 18739542 ECH
Lal12g0917 12 7633498 7637188 Lal13g1140 13 8722915 8726007 LSH
Lal20g0075 20 499686 503620 Lal13g1140 13 8722915 8726007 PCT
Lal13g1140 13 8722915 8726007 Lal20g0075 20 499686 503620 PCT