Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1137 ATGGCGCATAGGTTGCTGAGAGATCACGAAGCCGATGGATGGGAGCGTTCCGATTTCCCCATCATCTGCGAATCTTGCCTCGGCGATAGTCCCTACGTTCGAATGACAAAAGCAGAGTATGACAAAGAATGCAAGATTTGTACACGGCCTTTTACTGTTTTTAGATGGAGACCTGGCCGAGATGCAAGATATAAGAAAAGTGAGATCTGCCAGACATGTAGCAAATTGAAAAATGTTTGTCAGGTGTGCCTTCTGGATCTTGAATATGGTTTGCCTGTTCAAGTCCGTGATACAGCTCTGAGTATTGATTCTAATGATGCCATTCCCAAGAGTGATGTTAATAGGGAGTATTTTGCAGAAGAGCATGACCGCAAGGCTAGAGCTGGTATGGATTATGAGTCCTCTTTCGGCAAAGCACGCGCAAATGATACCATCCTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGTGCACATGTTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGCCCCTATAGGCACGAGATGCCAGTAACTGGGGAGTTGTCTCAACAAAATATCAAAGATCGTTATTATGGGGTGAATGATCCTGTGGCGTTAAAGCTACTTGGCAAGGCAGGAGAGATGTCCTCTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACCCTTTATGTTGGTGGACTTGATGCAAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGTGAAATTGAATCCATCAAAATAGTTCTTCAACGGGCTTGTGCTTTTGTGACCTATACAACCAGAGAAGCCGCCGAGAAGGCAGCAGAAGAACTCTCAAACAAACTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGTAGGCCGCAGTCGGCGAAACCTGAGTCTGATGACTCCGGTCAAGCAAGGCAGCAGGCTTCTGTGGCTCATAGTGGGTTGTTGCCCCGAGCGGTTATATCACAGCAGCAAAGCCAGGACCAGAACCAAGGAATGGTTTACTATAGCAATCCACCTCCTCAACAGGAAAGAAGCTATTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTATTCCTTCTCAAGAGGGTCCTCCTGGAGGACCTTCTGGGTCTGGGGAGAACAAACCCATTATGGAGAAGCAGCAAATGCAACATTATGGCCATCCAATGAGGCCTCCACCACCAGGCCAATATCATCATCAGTATTATCCTCCATTTGGCTATATGCCCCCAGTTCCCCCTTATCAACAACAGTACCCACCACCACCATATAATCCTTCAATGCCTCCTTCCCACCCACCAGCCGTAAATCATCCTTATCAGCATTCCATGCAGCCAGGGTCTTCACAGACAGGGTCTGGTCAGGGTGGCTCTGCACTGGCCGAAGCCGGAACATCGGCATCCGGGTCACAGCAACAATGA 1458 0.4801 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGMDYESSFGKARANDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMSSLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKIVLQRACAFVTYTTREAAEKAAEELSNKLVIKGLRLKLMWGRPQSAKPESDDSGQARQQASVAHSGLLPRAVISQQQSQDQNQGMVYYSNPPPQQERSYYPSMDPQRMGALIPSQEGPPGGPSGSGENKPIMEKQQMQHYGHPMRPPPPGQYHHQYYPPFGYMPPVPPYQQQYPPPPYNPSMPPSHPPAVNHPYQHSMQPGSSQTGSGQGGSALAEAGTSASGSQQQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1137 485 MobiDBLite consensus disorder prediction 306 320 - -
Lal13g1137 485 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 460 IPR039171 GO:0003723
Lal13g1137 485 MobiDBLite consensus disorder prediction 333 359 - -
Lal13g1137 485 MobiDBLite consensus disorder prediction 301 321 - -
Lal13g1137 485 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 460 - -
Lal13g1137 485 MobiDBLite consensus disorder prediction 333 388 - -
Lal13g1137 485 SMART rrm1_1 229 297 IPR000504 GO:0003723
Lal13g1137 485 Pfam Torus domain 143 194 IPR032297 -
Lal13g1137 485 Gene3D - 149 208 - -
Lal13g1137 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Lal13g1137 485 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Lal13g1137 485 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Lal13g1137 485 Gene3D - 212 311 IPR012677 -
Lal13g1137 485 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Lal13g1137 485 MobiDBLite consensus disorder prediction 453 485 - -
Lal13g1137 485 CDD RRM_RBM22 227 300 - -
Lal13g1137 485 SUPERFAMILY RNA-binding domain, RBD 222 314 IPR035979 GO:0003676
Lal13g1137 485 MobiDBLite consensus disorder prediction 421 485 - -
Lal13g1137 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Lal13g1137 485 MobiDBLite consensus disorder prediction 421 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1137 Lal-Chr13 8691384 8695993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1137 215 289 Eukaryotic Initiation Factors Gene Family AT1G49760 35.000 1.09e-07 52.4