Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1133 ATGGTTAGATCATGTTGGAAACCTTCTATAGAGGGTGATGATGGAGATGAGAATGGAAAAGTTGATGGATTGCTATGGTACAAGGATTTTGGGAACCATCTTTATGGAGAATTCTCAATGGCTATAATTCAAGCCAATAGTTCATTGGAGGACCGAAGTCAAGTTGAATCTGGACCATTGAGTTCAAACCATTTGGGTCCTCAAGGGACCTTTATTGGTGTCTATGATGGTCATGGTGGAACTGAGGCCTCACAATTTGTCACTGATAATCTTTTTTCCAATATCAAAAGGTTTGCATGTGAACATGAAGGGATATCAGAAAATGTGATAAAAAGGGCATATTCAGCTACAGATGAAGGTTTTCTATCTCTTGTGAAGAAACAATGGCTAAACAAACCACACATTGCATCCACAGGTACTTGTTGTTTGGCTGGGATAATTTGCAACAACATGCTATATATTGCAAATTCTGGAGACTCTAGAGTTGTGTTAGGAAGATTAGAGAGGACAATGAAGGAAACATCAGCTATACAATTATCCACAGAACATAATGTTAATCAAAAAATGGTGAGAGATGAAATTCGGTCAAAGCACCCTTATGATTCTCAAATAGTGGTTATGAAACACAACGTTTGGCGTGTCAAAGGCCTCATACAGGTATACGGTTTAATTAATGAACCACTGGTTAAACCGTTATACCACTATAACAGTACCTTGACTATTTTGATAATCGATATGGTTTCAAGATCCATAGGTGATGCATATCTAAAGAAAGCAGAGTTTAACAAGGAGCCTCTACCATCTAAGTATAGGATACCTGAAACATTCTTCAACCCTATTCTTACTTGTGAGCCATCAATATCAACACATAAACTCCACTCTGATGATCAATTTCTCATATTTGCTTCTGATGGTTTATGGGAACATCTTACCAACCAAGAAGCTGTTAGCATAGTCAACAATAACCCACCTAATGGAATTGCTAAGCGTCTTGTGAAAGCTGCACTTAGGGAAGCAGCTAAGAAAAGAGAAATGAGATATTCAGATCTTCAAAAGATTGAACAAGGGGTGAGGAGACACTTCCATGATGATATAACAGTAATTGTTGTGTATCTAAATCCCAAATCGAGTGATAATATCAATTGTTCTCACTTGAGTTCTCCTATTTCGATAAAGGGAGGTGATTCAGCTTATAGTTACTAG 1203 0.3749 MVRSCWKPSIEGDDGDENGKVDGLLWYKDFGNHLYGEFSMAIIQANSSLEDRSQVESGPLSSNHLGPQGTFIGVYDGHGGTEASQFVTDNLFSNIKRFACEHEGISENVIKRAYSATDEGFLSLVKKQWLNKPHIASTGTCCLAGIICNNMLYIANSGDSRVVLGRLERTMKETSAIQLSTEHNVNQKMVRDEIRSKHPYDSQIVVMKHNVWRVKGLIQVYGLINEPLVKPLYHYNSTLTILIIDMVSRSIGDAYLKKAEFNKEPLPSKYRIPETFFNPILTCEPSISTHKLHSDDQFLIFASDGLWEHLTNQEAVSIVNNNPPNGIAKRLVKAALREAAKKREMRYSDLQKIEQGVRRHFHDDITVIVVYLNPKSSDNINCSHLSSPISIKGGDSAYSY 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1133 400 Gene3D - 28 381 IPR036457 -
Lal13g1133 400 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Lal13g1133 400 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 246 396 - -
Lal13g1133 400 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 3 227 - -
Lal13g1133 400 Pfam Protein phosphatase 2C 58 341 IPR001932 -
Lal13g1133 400 PANTHER ALPHABET, ISOFORM E-RELATED 246 396 - -
Lal13g1133 400 PANTHER ALPHABET, ISOFORM E-RELATED 3 227 - -
Lal13g1133 400 SUPERFAMILY PP2C-like 44 374 IPR036457 -
Lal13g1133 400 CDD PP2Cc 35 372 IPR001932 -
Lal13g1133 400 ProSiteProfiles PPM-type phosphatase domain profile. 34 372 IPR001932 -
Lal13g1133 400 SMART PP2C_4 31 370 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1133 Lal-Chr13 8648999 8652888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1133 1 373 PP2C-type Phosphatase Gene Family AT3G12620 62.500 3.54e-175 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1133 K01102 - gmx:100819870 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1133 13 8648999 8652888 Lal13g1133 13 8648999 8652888 ECH
Lal12g0270 12 1934135 1939499 Lal13g1133 13 8648999 8652888 LSH
Lal13g1133 13 8648999 8652888 Lal24g0208 24 1512277 1516702 LSH
Lal1g1837 1 20658654 20661592 Lal13g1133 13 8648999 8652888 PCT
Lal13g1133 13 8648999 8652888 Lal1g1837 1 20658654 20661592 PCT