Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1125 ATGGAAGAAACAACAGCAGCCATCATGGCTGCACTCTCCACCCTCTCACCTTCTCATCTCTCAAATCTCACAAACACCATCTTCTCAGCCACCCACCACCACCATCGCCGCCTCTCCTTCGTCCTCTCTTCCCCAACCCTTTTCTCTTTAACCCTTCATCATCTCAACACACTCTCCCTCCCCCAAAAGACCCTCCTCATTGCCCGCCACCTTCTCTCATCTCTCCACCACCTCACCCAACACCTCACATCATCGCCACCGCTGCCTCTGTTCACCGCAATCAGGCAGCGTGGGCTTGATGCTGTGTTACTACTACTCTTGTTCTGTGACACAAACAAACACAGCCCAGAAGCTTTGAATGCACCCTATTCAGAATGGAGGGTGAACATGTGCAAGCTCTACTCTCATACTTTGTTGAAACTTTCTTGTTCTTCAGTTACACCCATTTGTGTAGGGACAATATTAATACCTTATATTGAGATGGTGGCCCGGTGCTGGAGGATGGTGGAAGCATTGGGTTGTGGTGGTGGAGGGAAGGAGGTGGCGGCTGCAGCGTCAACGGTGGTTGCTCTGCCGGCAGTGGAGGTGATGGTGGGTGGGAAAGAGTGTGTGATATGCAAAGAAGAGATGAGAGTAGGAAGAGATGTATGCGAATTGCCATGTCAGCACTTGTTTCATTGGATGTGTATATTGCCTTGGCTGAGGAAGAGAAACACGTGCCCTTGCTGCAGGTTCAGGCTACCGTCTGATGATGTCTTTGGAGAGATCCAACGGCTGTGGGAAGTCTTGGTTAAAATGGGTCCAAAATACTACGTAGTATGA 822 0.5012 MEETTAAIMAALSTLSPSHLSNLTNTIFSATHHHHRRLSFVLSSPTLFSLTLHHLNTLSLPQKTLLIARHLLSSLHHLTQHLTSSPPLPLFTAIRQRGLDAVLLLLLFCDTNKHSPEALNAPYSEWRVNMCKLYSHTLLKLSCSSVTPICVGTILIPYIEMVARCWRMVEALGCGGGGKEVAAAASTVVALPAVEVMVGGKECVICKEEMRVGRDVCELPCQHLFHWMCILPWLRKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKMGPKYYVV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1125 273 SUPERFAMILY RING/U-box 198 249 - -
Lal13g1125 273 SMART ring_2 203 243 IPR001841 -
Lal13g1125 273 Pfam Ring finger domain 201 244 IPR001841 -
Lal13g1125 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 269 - -
Lal13g1125 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 2 269 - -
Lal13g1125 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 255 IPR013083 -
Lal13g1125 273 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1125 Lal-Chr13 8576150 8576971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1125 2 265 C3H Transcription Factor Family AT5G02750 50.350 6.57e-80 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1125 - - pvu:PHAVU_007G161400g 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1125 13 8576150 8576971 Lal13g1125 13 8576150 8576971 ECH
Lal12g0905 12 7492532 7493377 Lal13g1125 13 8576150 8576971 LSH