Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1113 CTGAATAATCTCTCCTTTTATTGTTTGGGTCGCTATATAAGTCAAGCCCAAAGGATAAATACTCCGAGCAAGCCCACCAAATCGAACAGAACAGTTACTTTTATAAAGAAAACAGATTCGTCGTTAACATTTGCGCCTCCGCTTCTAGGGTTTCAGGAACTATTGCATTCAACACCTGCGTGTGGATCCAAAAAAATGGCGAGGATTAAGGTGTACGAGTTGAGGAGCAAGACGAAGGCGGAGCTTTTGAATCAGCTGAAGGATCTGAAGGCGGAGCTCGCTCTTCTCCGTGTCGCCAAAGTCACCGGCGGTGCCCCTAACAAACTCTCCAAGATAAAAGTGGTGAGGTTGAACATAGCACAAGTGTTAACAGTTATTTCACAGAAGCAGAAAGCAGCTCTCAGAGAGGCTTATAAGAATAAGAAGTATTTGCCTCTTGATCTTCGTCCCAAGAAAACCCGTGCTATTCGAAGACGCCTTACCAAACACCAGGCGTCATTGAAGACAGAAAGGGAGAAGAAGAGGGAGCTTTACTTTCCAATAAGGAAGTATGCAATCAAAGTTTAG 567 0.4427 MNNLSFYCLGRYISQAQRINTPSKPTKSNRTVTFIKKTDSSLTFAPPLLGFQELLHSTPACGSKKMARIKVYELRSKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLNIAQVLTVISQKQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKRELYFPIRKYAIKV 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1113 188 Gene3D - 143 188 - -
Lal13g1113 188 PANTHER 60S RIBOSOMAL PROTEIN L35 60 188 IPR045059 GO:0000463|GO:0022625
Lal13g1113 188 Hamap 50S ribosomal protein L29 [rpmC]. 69 129 IPR001854 GO:0003735|GO:0005840|GO:0006412
Lal13g1113 188 Gene3D - 66 142 IPR036049 GO:0003735|GO:0005840|GO:0006412
Lal13g1113 188 Coils Coil 72 99 - -
Lal13g1113 188 SUPERFAMILY Ribosomal protein L29 (L29p) 69 130 IPR036049 GO:0003735|GO:0005840|GO:0006412
Lal13g1113 188 PANTHER 60S RIBOSOMAL PROTEIN L35-1-RELATED 60 188 - -
Lal13g1113 188 CDD Ribosomal_L29_HIP 73 129 - -
Lal13g1113 188 Pfam Ribosomal L29 protein 73 129 IPR001854 GO:0003735|GO:0005840|GO:0006412
Lal13g1113 188 TIGRFAM L29: ribosomal protein uL29 73 129 IPR001854 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1113 Lal-Chr13 8485346 8488837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1113 66 188 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 88.618 3.94e-72 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1113 K02918 - gmx:100801539 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0310 12 2193317 2194790 Lal13g1113 13 8485346 8488837 LSH
Lal13g1113 13 8485346 8488837 Lal24g0228 24 1660140 1661852 LSH