Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1101 ATGTTCCATTGGAGTTTGAATGCAAAACATGTGGCCGCAAATTCTCATCATTTCAAGCTTTGGGTGGCCAGAACTAGCCACAAGAAACCAAAACTCATTGGAAATCAAGAAATGAAAGGAGAGACCAAGAAACCAAAGATGCATGAGTGTTCCATTTGTGGTAAAAAATTCTCACTTGGCCAAGCACTTGGAGGACACATGAGAAGACATAAAGTTGATGCTACTAATTATGAAGAAGGGTTCAATTCTATTAATCATGTTATTGCTAAAGTTCCATCTTTTAGTAGATCTAATAGTAAGAGAGTTATGTGCTTGGACTTGAACTTGACACCATTGGAAAATGATTTGAAGTTTTTGTTTGGAAACAAGGCACCTCAAGTTCAGTTTTCTTTGTTATGA 399 0.3659 MFHWSLNAKHVAANSHHFKLWVARTSHKKPKLIGNQEMKGETKKPKMHECSICGKKFSLGQALGGHMRRHKVDATNYEEGFNSINHVIAKVPSFSRSNSKRVMCLDLNLTPLENDLKFLFGNKAPQVQFSLL 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1101 132 Pfam C2H2-type zinc finger 48 71 - -
Lal13g1101 132 Gene3D Classic Zinc Finger 23 100 - -
Lal13g1101 132 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Lal13g1101 132 SUPERFAMILY beta-beta-alpha zinc fingers 45 73 IPR036236 -
Lal13g1101 132 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Lal13g1101 132 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 23 126 - -
Lal13g1101 132 PANTHER ZINC FINGER PROTEIN ZAT5 23 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1101 Lal-Chr13 8377071 8377469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1101 24 132 C2H2 Transcription Factor Family AT3G53600 46.847 6.22e-26 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal13g1101 zf-C2H2_6 2e-09 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1123 11 14974083 14974502 Lal13g1101 13 8377071 8377469 PCT
Lal13g1101 13 8377071 8377469 Lal11g1123 11 14974083 14974502 PCT