Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1091 ATGCCTAAGGAGATTGTGAAAGTTGCATATATCAACGATATCAATGCAAGGAAAGCATCATTCAAGAAAAGAAGGAAAGGCATATTTAAGAAACTGAATGAACTCACAGTTTTATGTGGGATTCAAGCTTGTGCAATACTTCAAAACCCTTTTGATTCTGAGATAGAGGTTTGGCCTAACCCATCAAAAGCTAATCAAGTGATTGAGAGATTTCAGAATATATCTGTGACCGATGAATCTAGGAATATGAACCAAGAAAGCTTCTTCATTCAGAGAATCTCCAAAGCCCAAGTCAAGCTTGATTTCCAGCGTCAGGAGAATCATGAGAAGCAGATGAACCTAGCTATGTTCGAGTTTATGCAAACCTCAAAGCTTCCAGAAACCCTCACAATCACAGATTTGAAGGTTATGAATGATTTGATAGAGAAACATATTAAGGAAATTGAATATAAGAAATCTACCCTTGTTTGA 471 0.3652 MPKEIVKVAYINDINARKASFKKRRKGIFKKLNELTVLCGIQACAILQNPFDSEIEVWPNPSKANQVIERFQNISVTDESRNMNQESFFIQRISKAQVKLDFQRQENHEKQMNLAMFEFMQTSKLPETLTITDLKVMNDLIEKHIKEIEYKKSTLV 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1091 156 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 6 151 - -
Lal13g1091 156 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Lal13g1091 156 PANTHER MADS BOX PROTEIN 6 151 - -
Lal13g1091 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lal13g1091 156 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Lal13g1091 156 CDD MADS_SRF_like 6 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal13g1091 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal13g1091 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1091 Lal-Chr13 8237221 8237691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1091 1 156 Type I MADS-box Gene Family AT3G05860 36.250 1.75e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal13g1091 SRF-TF 3.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1091 - - gmx:100792290 176.022