Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1089 ATGGGAGAAGAAGTGGTTTGTGCGCAAGCATTAGAAAATGGAAAGAATGAAAACAACGAGGAGGAATCACGAATGGAACTGAAGCGTGATTACAACCAATGCATTGCTGATACAGTTGATAATAATACCGAGCCTGACCAATCTCCGAATAAGAAGCAAGTGAAAGAGGCTTCCAACGACGAAGTTTGCTCTGAGGTTACGAACCCTAACACTTCTGCAGCAGAAAATGGGTTAACCACCTTTCATGATATCAGTAGCCAACCAAGTGAGTCGGCGAATATTGTTGAGTGTGGGGAATTGACTTCTACTTGTTTGGAGAACTCAAGTTCTTCGGAAGAGACATTGAATACGGACGATCCGAAAAAGAACAAAAACAGTAATACATCTCAGAATGATAATAAGGACACAAACAGTGCCGCAGCAATGTCTTGTGTTGTGATGGAAATTCCTAAGCATGCTAGTTCTTCTGGGGTCAGGAAGATTACTTTTAAGTTCAGTAAGAAGAAAGAGGACTATGATGAAGAATATTTGGCTAAGGCTGATTTAGATCATAATAGTGAGTTGTATGAAAGCTCAGGTGGAATGGGATATGTTGGAGCCGGAGATATGGACTTTTATGCTGCTCGCAATATGGAATTGAAAATGTCGAAGAAGGTTGTCCCCAACTACTACCCTACGAATGTTAAAAAGCTTTTATCAACTGGTATCCTTGATGGAGCTGTAGTTAAATATATGTACAACCCCATGAAGGTTGAGCTGCGTGGGATTATTGGTGGCGGTGGATACTTGTGTAGCTGTTCACTGTGCAATTACTCCAGAGTGCTTAGTGCATATGAGTTTGAGCAGCATGCTGGTGCCAAGACTAGACATCCTAACAATCATATATACCTAGAGAATGGAAAGCCAATATACAGCATAATACAGGAAATAAAAATTGCTCCACTCAACATATTAGATGAGGTTATAAAGAATGTGGCTGGTTCATCTGTCAATGAGGAGTGCTTCCAGGCTTGGAAAGAAAGCCTTCTACAAAGCAATGGGAGGGTTAAAACTTATAAAGATAATAGCACAAAGCATACTGGAATGCCTCATAAACACATAAGTAATAGCGAGTCAGATGGTGAGCGTTGGCGCAATGGTAAGATTGCTGCAAACAACCTCTCCACTCGTGGGGATAAGGTTGAGCCTCTTCGCAAAGCTAAGGTTGCTTGCTTTGTGACCCAGAGGTCATGGGTTCTCAAACCCTGTAAAAACTCTCTTCTCTTGCGAGGTCAATCTGTAGAAAGTGTGTGCCTTTTGTCTTCTTTGCATGTTCCGAGTCATTTTGAGCAGCAAATGTATGTGCAGCAGACTGCTGACGGGTGGAAACATGCAGTGAAGAAAAGCTCCTGCCCAGGCGTACAGCTGAAGAGAAATGTGGATGGCTGCACTAAGAGAAGGGACAATGATTTACACAAGTTACTTTTTATGCCAAATGGACTCCCAGATGGTGCTGATTTGGCTTATTATGTCAAGGGACAGAAATTACTTGGAGGTTACAAACAGGGGAATGGTATAGTTTGTGGTTGTTGTGACTTAGAGATAAGCCCCTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGACGTCAACCTTACCGGCACATATATACTTCCAATGGATTAACACTCCATGATATAGCTCTCTCCTTGGCAAGTGGTCAAAATCTTACCACAGGAGATAGTGATGATATGTGTGCAATATGTGGAGATGGAGGGGATTTGATTCTTTGCAATGGATGTCCTAGGGCTTTTCATGCAGCTTGCTTGGGTTTTGATTCTGCTCCAGAAAGTAGTTGGCATTGTCTAAACTGTAGAGATAATGTTGGTAATGGAAGAGAATCTTCTATGGCGAGGCCAATCATGATACGGTTGACACAAGTTGATAAAGCTCCAGAGTTTGAAATGGGGGGATGTATTGTTTGCAGGAAACATGATTTCAGTGTTGCTAAATTTGATGAGCGAACAGTAATAATCTGTGACCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGGACATAGGACTATGTGAGTTGGAAGAGCTGCCTAAGGATAAATGGTTTTGTTGTGATGACTGCAATCAAATATATGTGGCTCTTCAGAATTCAGTTTCTGCTGGAGCAGACATTATACCAACTTCCTTGTCAGAATTAATAATCAAGAAGCATCAGGAGAGGGGATTATGTACCTATGAAGGCACAAATGGCATCCAGTGGAGAATTTTAAGTGGGAAGAGTCGTTATCCAGAGCATTTACCTTTACTTTCCCGTGCTGCTGCAATTTTCCGAGAGTGTTTTGATCCCATTGTTGCATTATCTGGTCGTGACTTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAATTTGGGGGGATGTATTGCGTTGTTTTAATTGTGAATTCTGTTGTTGTATCTGCTGGTCTGCTTAGGATTTTTGGCTGTAATGTTGCCGAGCTTCCACTGGTAGCTACAAGTAGAGAATATCAAGGAAAAGGTTATTTTCAAGTGCTATTCTCTTGCATAGAGAGATTGCTGTCTTCTCTCAATGTAGAAAAGCTGGTACTTCCTGCTGCAGGGGATGCTGAGTCAATTTGGACTAAGAAATTAGGCTTTCGAAAGATGAGTGAAGATCAGTTATCCAAACATCTCAGGGAGGTGCAGCTCACCCTCTTCAATAAAACTTCAATGCTCGAGAAGACAGTGCAGCCGGCAATAGAGTGA 2772 0.4206 MGEEVVCAQALENGKNENNEEESRMELKRDYNQCIADTVDNNTEPDQSPNKKQVKEASNDEVCSEVTNPNTSAAENGLTTFHDISSQPSESANIVECGELTSTCLENSSSSEETLNTDDPKKNKNSNTSQNDNKDTNSAAAMSCVVMEIPKHASSSGVRKITFKFSKKKEDYDEEYLAKADLDHNSELYESSGGMGYVGAGDMDFYAARNMELKMSKKVVPNYYPTNVKKLLSTGILDGAVVKYMYNPMKVELRGIIGGGGYLCSCSLCNYSRVLSAYEFEQHAGAKTRHPNNHIYLENGKPIYSIIQEIKIAPLNILDEVIKNVAGSSVNEECFQAWKESLLQSNGRVKTYKDNSTKHTGMPHKHISNSESDGERWRNGKIAANNLSTRGDKVEPLRKAKVACFVTQRSWVLKPCKNSLLLRGQSVESVCLLSSLHVPSHFEQQMYVQQTADGWKHAVKKSSCPGVQLKRNVDGCTKRRDNDLHKLLFMPNGLPDGADLAYYVKGQKLLGGYKQGNGIVCGCCDLEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLASGQNLTTGDSDDMCAICGDGGDLILCNGCPRAFHAACLGFDSAPESSWHCLNCRDNVGNGRESSMARPIMIRLTQVDKAPEFEMGGCIVCRKHDFSVAKFDERTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNQIYVALQNSVSAGADIIPTSLSELIIKKHQERGLCTYEGTNGIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVALSGRDLIPVMVYGRNISGQEFGGMYCVVLIVNSVVVSAGLLRIFGCNVAELPLVATSREYQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKHLREVQLTLFNKTSMLEKTVQPAIE 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1089 923 MobiDBLite consensus disorder prediction 15 33 - -
Lal13g1089 923 MobiDBLite consensus disorder prediction 60 76 - -
Lal13g1089 923 ProSiteProfiles Zinc finger PHD-type profile. 576 621 IPR019787 -
Lal13g1089 923 Pfam PHD-finger 578 619 IPR019787 -
Lal13g1089 923 Gene3D - 799 906 - -
Lal13g1089 923 ProSitePatterns Zinc finger PHD-type signature. 579 618 IPR019786 -
Lal13g1089 923 ProSitePatterns Zinc finger PHD-type signature. 652 707 IPR019786 -
Lal13g1089 923 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 572 648 IPR013083 -
Lal13g1089 923 MobiDBLite consensus disorder prediction 121 136 - -
Lal13g1089 923 CDD PHD1_AIRE 578 618 - -
Lal13g1089 923 SUPERFAMILY FYVE/PHD zinc finger 650 704 IPR011011 -
Lal13g1089 923 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 26 919 - -
Lal13g1089 923 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 649 710 IPR013083 -
Lal13g1089 923 SMART PHD_3 651 708 IPR001965 -
Lal13g1089 923 SMART PHD_3 578 619 IPR001965 -
Lal13g1089 923 MobiDBLite consensus disorder prediction 354 376 - -
Lal13g1089 923 Pfam Tify domain binding domain 255 309 IPR032308 -
Lal13g1089 923 Pfam Tify domain binding domain 512 561 IPR032308 -
Lal13g1089 923 PANTHER AUTOIMMUNE REGULATOR 26 919 - -
Lal13g1089 923 MobiDBLite consensus disorder prediction 105 136 - -
Lal13g1089 923 MobiDBLite consensus disorder prediction 1 76 - -
Lal13g1089 923 SUPERFAMILY FYVE/PHD zinc finger 574 622 IPR011011 -
Lal13g1089 923 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 807 893 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1089 Lal-Chr13 8198369 8208841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1089 1 918 PHD Transcription Factor Family AT3G53680 51.728 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal13g1089 TDBD 4.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1089 - - gmx:100808999 1306.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1089 13 8198369 8208841 Lal24g0819 24 6492144 6502994 LSH