Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1083 ATGGCAGCGGCACGGCGTCTCCGTGACCTGCAATCCCATTCCGGCAACAAGATCTGTGTCGACTGTTCCCAAAAGAATCCTCAATGGGCCTCCGTCTCTTACGGCGTTTTCATGTGTCTCGAGTGCTCCGGCAAACACCGCGGCCTCGGTGTTCACATATCCTTCGTCCGATCCGTCACTATGGACTCTTGGTCTGAAATCCAGATCAAGAAAATGGAAGCTGGTGGCAACGATAAACTTAACTCGTTCCTCTCCCGTTATGAAATCCCTAAGGAAACTGATATTGTTACCAAATATAATACTAACGCTGCTTCTGTTTATAGGGATCGGATTCAAGCCATTGCTGAAGGCCGCGCGTGGCGCGATCCGCCTGTTGTTAAGGAGAATCTCAAGGGAAAGCAGAGTGGTGGTGGAGGTAGTGGTAAGAGTAATGGAGGGTGGGATGATGATTGGGGTAATGATGATGGTTTTGGGAATTCTGGAGAAATTAGGCGGAATCATTCGACTGGGGATTTCAGGAGCGGCGGTGGTGGTGGTGGGGCGCCTGTGAGGTCGAGGTCTACCACGGGCTTCGCACGTTCAGAATATGAGGCTTCTGCTGCAAATAAGGAGAGCTTTTTCGCGAAGAAGATGGCTGAGAATGAATCAAGACCTGAGGGTCTTCCTCCATCTAAGGGTGGGAAGTATGTTGGGTTTGGATCGAGTCCTGCACCTTCTTCGCAGAGGAGTAATCCGCAAAATGATTATTTTTCTGTTGTTTCTCAGGGGATTGGTAAATTGTCGCTGGTTGCTGCCTCTGCTGCTCAAGAGATCACTTCTAAGGTCAAGGAAGGGGGTTATGACGGGAAGGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACAACAGAGATTGGACAAAGAACATGGGGTATAATGAAAGGGGTCTTGGCTATGGCTTCACAGAAGGTTGAGGAATTGGCTGGAGATGTTCCAAATTCGAAGACTGATAACTGGCCGCGAAATGAGAATGGTAGAAATGGTTACTACCAGGATTTCAATCAAGAGAGCAAAGGCGGAAATTCTTCAATTGGAAGAGAACAATCTTCATCCGGGCAATTTAAAACTCATAGCTCAAGCTCTTGGGACGACTGGGGCAACAAGGATATTAGGAAGGAAGAACCAGCTAAAGGATCGAGTCATTCTTCAGGTGGCCAGTTCAATACTTCCAACTCAAGCTCTTGGGATGATTGGGACCACAAAGTTTCTAGTAAGGAAGAACCAGCTAAAGGATCGGCTCCCCGTAACAATGATGGTTGGGCTGGCTGGGATGATGCCAAAGATGATGGGTTTGATAATTTTCATGAAGGTGCATCTAATAAGAAAGGTGCTGGTCATAAGGCAAAATCAGATTCGACCTGGACAGGGGGTGGCTTTAACTAA 1422 0.4761 MAAARRLRDLQSHSGNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNSFLSRYEIPKETDIVTKYNTNAASVYRDRIQAIAEGRAWRDPPVVKENLKGKQSGGGGSGKSNGGWDDDWGNDDGFGNSGEIRRNHSTGDFRSGGGGGGAPVRSRSTTGFARSEYEASAANKESFFAKKMAENESRPEGLPPSKGGKYVGFGSSPAPSSQRSNPQNDYFSVVSQGIGKLSLVAASAAQEITSKVKEGGYDGKVNETVNVVSQKTTEIGQRTWGIMKGVLAMASQKVEELAGDVPNSKTDNWPRNENGRNGYYQDFNQESKGGNSSIGREQSSSGQFKTHSSSSWDDWGNKDIRKEEPAKGSSHSSGGQFNTSNSSSWDDWDHKVSSKEEPAKGSAPRNNDGWAGWDDAKDDGFDNFHEGASNKKGAGHKAKSDSTWTGGGFN 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1083 473 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Lal13g1083 473 Pfam Putative GTPase activating protein for Arf 5 105 IPR001164 GO:0005096
Lal13g1083 473 CDD ArfGap_ArfGap1 3 117 - -
Lal13g1083 473 MobiDBLite consensus disorder prediction 411 425 - -
Lal13g1083 473 MobiDBLite consensus disorder prediction 392 410 - -
Lal13g1083 473 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 394 IPR044519 GO:0005096|GO:0016192
Lal13g1083 473 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 392 472 IPR044519 GO:0005096|GO:0016192
Lal13g1083 473 SUPERFAMILY ArfGap/RecO-like zinc finger 5 113 IPR037278 -
Lal13g1083 473 MobiDBLite consensus disorder prediction 212 246 - -
Lal13g1083 473 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Lal13g1083 473 MobiDBLite consensus disorder prediction 125 192 - -
Lal13g1083 473 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Lal13g1083 473 MobiDBLite consensus disorder prediction 328 374 - -
Lal13g1083 473 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 394 - -
Lal13g1083 473 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 392 472 - -
Lal13g1083 473 MobiDBLite consensus disorder prediction 434 461 - -
Lal13g1083 473 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Lal13g1083 473 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Lal13g1083 473 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Lal13g1083 473 MobiDBLite consensus disorder prediction 375 391 - -
Lal13g1083 473 MobiDBLite consensus disorder prediction 321 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1083 Lal-Chr13 8154782 8160179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1083 5 91 C2H2 Transcription Factor Family AT4G21160 50.000 3.14e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1083 K12492 - gmx:100806519 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0886 12 7301378 7308792 Lal13g1083 13 8154782 8160179 LSH
Lal13g1083 13 8154782 8160179 Lal24g0816 24 6456968 6462609 LSH
Lal11g1113 11 14859034 14863235 Lal13g1083 13 8154782 8160179 PCT
Lal13g1083 13 8154782 8160179 Lal11g1113 11 14859034 14863235 PCT