Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1051 ATGGAAGCTCGCTCTGCTTTCTCTGTTGAAAGAACAAGTGTGAAACAGCTCAGTAACATGGGAATGTCTGGACCACTTTCTTCATCATGTCCAGTCTTTCCACTCCCAGCACCCGTAGAAGCGACATATCCCAAGTTGCCTGATTCACAACTGTCTTCGGTTGAAAAGGAGCTTATGACAAGACCTTTTACTCATTCAAATTCTCGCGGAGTAGTTGGGCACACTTTTTCATCTTCCCCTGGATATTCACCTGATCTTCATCACTCATCCCTTTCATCCCATGAAAGACATTCTACAAATTCTCATTTCATTTCACAATCAACTACTACCGTAGCTCCATTACCATTACCATATTTCAAAGAAAATAGTGCTTCCTTCCTTACAGATTCCATGCCCAGCTTTCTGGATTTTCCTGCAAATACCTCCAATGGTCATAGTCAGGTAGAAGGCGATGTCTGCAATATCATGGCATCTGAGGAGTATTGTCAGCGAAAAGATTGGCAGGAGTGGGCTGACCAGCTAATCAATGATGATGATTCTTTGACTTCTAACTGGAACAACCTTTTTGCTGACGACATTCAAGATTTTGAGCCAAAGGTGCCATTCCAGGTTTCAAAGCCATCTTCACAATTTCCAGGACATCAAGCCCATGGCCACCAACAACTTCCTGCATCATCTGGAGAAAATTGCAATGGTGCTGCTCCCTTTTCCTCTGCAAATTCTGCTTCTGCCAAGCCACGGATGCGTTGGACACCAGAACTTCATGAGGCCTTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGGTTAACTATATATCATGTTAAAAGCCACTTGCAGATATGGTTTGAAATGCAGAAATACAGGACCGCTCGATATAGACCAGAGTCATCTGAAGGGTCCTCTGGCAATGGAGTCACAGAGAGAAAAACAAGTTCCATTGACGATATTTCATCTCTAGATTTGAAAACAAGCTTTGTTACCAGACTATCAAACACAGGTTGCTGCACGGGCCACACAAAAGGATTAAGGCCATTAGTGACAATATTTGATGGTTGCATTGAAGTTTCTGGTCATATTTCATGCACGATTCAAAGAAATCTACAATTGCGAATAGAAGAACAAGGAAGGTGCCTCCAGATGATGTTTGAGAAGCAATGCAAACCCGGCATTGAAACATTTAAGGCATCGTCATCTATCATTGACAACCCATCTGGACTCTCTTTAGATGGTACTAAAGATTTTAATGCCAAAAGTAACTCAGAAGCGTCACAAGTGGACTGTTACAGGTCAGGACCTGATCAAGCTGATAATAGCATGGCAGTTGAGGAAGGCTCACCTCAAATGGGTGCGAAGCACGATTCTCCCATGCAACATGTTATCGGTGATGATGTTAGTGCTCAAGCCTCAAAGCGTAAAAGAACAAACGAGTAG 1479 0.4327 MEARSAFSVERTSVKQLSNMGMSGPLSSSCPVFPLPAPVEATYPKLPDSQLSSVEKELMTRPFTHSNSRGVVGHTFSSSPGYSPDLHHSSLSSHERHSTNSHFISQSTTTVAPLPLPYFKENSASFLTDSMPSFLDFPANTSNGHSQVEGDVCNIMASEEYCQRKDWQEWADQLINDDDSLTSNWNNLFADDIQDFEPKVPFQVSKPSSQFPGHQAHGHQQLPASSGENCNGAAPFSSANSASAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQIWFEMQKYRTARYRPESSEGSSGNGVTERKTSSIDDISSLDLKTSFVTRLSNTGCCTGHTKGLRPLVTIFDGCIEVSGHISCTIQRNLQLRIEEQGRCLQMMFEKQCKPGIETFKASSSIIDNPSGLSLDGTKDFNAKSNSEASQVDCYRSGPDQADNSMAVEEGSPQMGAKHDSPMQHVIGDDVSAQASKRKRTNE 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1051 492 Pfam MYB-CC type transfactor, LHEQLE motif 379 403 IPR025756 -
Lal13g1051 492 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 242 302 IPR017930 -
Lal13g1051 492 Pfam Myb-like DNA-binding domain 247 295 IPR001005 -
Lal13g1051 492 MobiDBLite consensus disorder prediction 69 88 - -
Lal13g1051 492 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 245 299 IPR006447 GO:0003677
Lal13g1051 492 MobiDBLite consensus disorder prediction 205 245 - -
Lal13g1051 492 Gene3D - 244 309 - -
Lal13g1051 492 MobiDBLite consensus disorder prediction 69 96 - -
Lal13g1051 492 MobiDBLite consensus disorder prediction 205 247 - -
Lal13g1051 492 MobiDBLite consensus disorder prediction 308 327 - -
Lal13g1051 492 SUPERFAMILY Homeodomain-like 243 302 IPR009057 -
Lal13g1051 492 MobiDBLite consensus disorder prediction 438 492 - -
Lal13g1051 492 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 28 492 - -
Lal13g1051 492 MobiDBLite consensus disorder prediction 310 327 - -
Lal13g1051 492 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Lal13g1051 492 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 28 492 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1051 Lal-Chr13 7780574 7786596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1051 1 414 G2-like Transcription Factor Family AT4G28610 41.686 4.31e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal13g1051 Myb_DNA-binding 3.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1051 - - gmx:100793593 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1051 13 7780574 7786596 Lal13g1051 13 7780574 7786596 ECH
Lal12g0639 12 4666526 4670125 Lal13g1051 13 7780574 7786596 LSH
Lal13g1051 13 7780574 7786596 Lal24g0555 24 3914745 3924588 LSH
Lal11g1080 11 14483495 14491161 Lal13g1051 13 7780574 7786596 PCT
Lal18g0235 18 1957189 1961086 Lal13g1051 13 7780574 7786596 PCT
Lal13g1051 13 7780574 7786596 Lal11g1080 11 14483495 14491161 PCT