Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1043 ATGGATCATGTGGTTGGTGACAAGTTTAAACTGGGAAGGAAAATTGGAAGTGGGTCTTTTGGGGAGCTCTATTTAGGTGTTAATATACAAACTGGAGAGGAGGTGGCTGTGAAGCTGGAATCAGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCACCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTTATGGTCATCGATCTTCTTGGGCCAAGTCTTGAAGATTTGTTCAACTATTGCAACCGGAAGTTCACATTGAAGACAGTTTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCAGACAATTTTCTAATGGGCCTAGGACGGAAAGCAAACCAGGTGTATGCCATTGACTATGGCCTCGGAAAAAAGTATAGGGATCTTCAGACTCATAGGCATATACCATACAGGGAAAACAAGAACCTTACTGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATTGAGCAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCATGGCAGGGTCTCAGGGCTGGCAACAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAAGTCTCAATTTCCGTAGAGGTGCTCTGTAAATCATATCCCTCCGAGTTTGTATCGTACTTCCATTATTGCCGTTCATTGCAGTTTGAGGACAAGCCAGATTATTCATATTTGAAGAGACTTTTCCGAGATCTATTTATTCGAGAAGGTGGTTGTGAATTGATAGACTTTGTTAGTGCAGGCTATCAATTTGACTATGTTTTCGACTGGACTATATTGAAGTATCCACAAAGTAATGGAAGCTCTAGAGGGAGGCATGGCACTGGCAAGGCAGCTATGGATGTAGGTCAACCTATACAAAAGCCAGAAAGGAACTCAGGTGGGAGAGAGATTCGAGAGAAATTTTCTGGTGCTGTTGAAACTTACTCCTGGAGGAACCCTGCAGGTGCTACTCCTCATGTTGAAACTTACTCCCGGAGGAACCCTGCTGGTGCTACTCCCCACATTGAAACTTACTCCCGGAGGAACCCTGCAGGTGCTACTCCTTTTGTTGAAACTTACTCCCGGAGGAACCCCGCAGGTGCTACTCCTCATGTTGAAACTTACTCCCGGAGGAACCCTGCAGGTGCTACTCCTCTTGTTGAAACTTACTCCCGGAGGAACCCTGCAGGTGCTACTCCTCTTGTTGAAACTTACTCCCGGAGGAACCCTGCAGGAGCTACTCCTTTTGTTGAAACTTACTCCCGAAGGAACCCTGCAGCTGCTAGTCCAATTGTTGATCGCGCCAAATATAGGACGTCTGAGGATATAGCAGTACACAAGGATTTGCATCATGCGCAACACGGTCAAGCTCGATATGGAAGCAGTTCAAAAAGAGCCTTAATCTCATCAAACAAGCAAGTTTCTTCAGGTGACCATACTGGCAGGCTGACCTCAAGTGGTGGCCGACAAACAGCCACGCATAGAATGCATGACACTAGACAAACAACTTTCACGCGCAGTGGTTCTATTAGAGGCGATCACGATGATCCTCTGAGGAGCTTTGAGCTCCTTAATATCAGGAGGTAG 1701 0.4503 MDHVVGDKFKLGRKIGSGSFGELYLGVNIQTGEEVAVKLESVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDYGLGKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLRAGNKKQKYDKISEKKVSISVEVLCKSYPSEFVSYFHYCRSLQFEDKPDYSYLKRLFRDLFIREGGCELIDFVSAGYQFDYVFDWTILKYPQSNGSSRGRHGTGKAAMDVGQPIQKPERNSGGREIREKFSGAVETYSWRNPAGATPHVETYSRRNPAGATPHIETYSRRNPAGATPFVETYSRRNPAGATPHVETYSRRNPAGATPLVETYSRRNPAGATPLVETYSRRNPAGATPFVETYSRRNPAAASPIVDRAKYRTSEDIAVHKDLHHAQHGQARYGSSSKRALISSNKQVSSGDHTGRLTSSGGRQTATHRMHDTRQTTFTRSGSIRGDHDDPLRSFELLNIRR 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1043 566 CDD STKc_CK1_delta_epsilon 8 281 - -
Lal13g1043 566 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1043 566 MobiDBLite consensus disorder prediction 494 530 - -
Lal13g1043 566 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lal13g1043 566 PANTHER CASEIN KINASE-RELATED 1 336 - -
Lal13g1043 566 PANTHER CASEIN KINASE-RELATED 455 545 - -
Lal13g1043 566 Gene3D Transferase(Phosphotransferase) domain 1 1 338 - -
Lal13g1043 566 PANTHER CASEIN KINASE I-LIKE 455 545 - -
Lal13g1043 566 PANTHER CASEIN KINASE I-LIKE 1 336 - -
Lal13g1043 566 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1043 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lal13g1043 566 MobiDBLite consensus disorder prediction 492 555 - -
Lal13g1043 566 SUPERFAMILY Protein kinase-like (PK-like) 4 281 IPR011009 -
Lal13g1043 566 MobiDBLite consensus disorder prediction 357 417 - -
Lal13g1043 566 SMART serkin_6 9 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1043 Lal-Chr13 7717108 7724207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1043 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 2.07e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lal13g1043 Pkinase 4.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1043 K08960 - gmx:100789031 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0849 12 6956300 6962890 Lal13g1043 13 7717108 7724207 LSH
Lal1g1881 1 21104336 21112106 Lal13g1043 13 7717108 7724207 PCT
Lal13g1043 13 7717108 7724207 Lal1g1881 1 21104336 21112106 PCT