LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal13g1042	ATGACTTCAACTAGGAGCTGGCTTCAGAGGTTACATCCTCAGGTTAAAACAAGGGTAGGTTCAAAGAAGAAGGGGGAGAATAATGATAATGGTGTAAATGAATATTCGAATGCGCCTGTGGATGAAGTCACAAAGCAGAAGGTTGCAGGTGCAAAGCAGTATATTGAAAACCATTATAAGGAGAAAATGAAGAATCTTCAAGAAAGGAAGGAGCGTAACTCACTTGCTTATGATAGTCGAACCGTCTTGGAAAAGAAGGTGTCTGATGCTGATGTCTCTGAAGAGGATCAAAAGAACCTTTTTAAGTTTTTAGAGAAAAAAGAAACTGAATATATGCGCCTAAAGAGACATAAGATGGGTGCAGATGATTTTGAGTTGTTGACTATGATTGGCAGAGGTGCATTTGGGGAGGTCAGAGTCTGTAGGGAGAAAACTTCAGGTCATGTATATGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGCAGACGCCAGGTTGAGCATGTCATATCTGAAAGGAATCTCCTTGCGGAGGTTGACAGCAATTGCATTGTCAAACTTTATTGTTCTTTCCAGGATGATGATTATCTGTATCTTATTATGGAATATGTACCGGGTGGGGATATGATGACTCTTCTTATGAGAAAGAATACCTTGACTGAAGATGAAGCTAGATTTTATGTAGGAGAAATAGTTCTGGCTATCGAGTCTATACATAAACGCAATTATATACACAGGGATATCAAGCCCGATAACTTATTACTTGATAGATATGGGCACTTGAAACTGTCCGATTTTGGACTTTGCAAACCATTAGATTGTAGAACACTAGAAGAAAAGGATTTTTCTATGGGTCAGAGTGTAAACGGATCTAGATTTACACAGAATGATGAACATGCTGCTCCAAAACGCACACAACAAGAACAACTGCAACACTGGCAACAGAATAGAAGGACATTGGCTTATTCCACAGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTGTTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTGGTAGGATATCCACCTTTTTATTCTGATGAACCAATAACAACATGTAGGAAGATTGTTAACTGGGAGTCTCACTTGAAATTTCCTGTAGAAGCAATGCTATCCCTGGAGGCTAAGGATCTCATTAGTAAACTTTTGTGTAATGTCAACCAGAGGCTGGGGTCTAAAGGTGCAGACGAAATAAAGGCACATGCATTCTTTGAAGGTGTTGAGTGGAATAAGTTATATCAAATGGAAGCTGCATTTATTCCTGAGGTCAAGGATGAGCTAGATACTCAGAATTTTGAAGATTTTGAGGATTTATTGCATCTGCAGTCTAACAACCAAACTAAAACAGCAGCAAGAACTGGTCCATGTAGGAAGATTCTTTCATCTAAGGATTTGAATTTCGTTGGATACACATATAAGAACTTTGAAATTGTCAACGATTATCAAGTTCCTGGGACAAAGACAACACCAGAGGTACCTGAGGTTTCTGATACATCATCTCCAAGCAATAAATCTCCTAAAGGAAGCTTTTTAAAGCTCTTGCCACCTCAATTAGAGGTATCTAAAATATTATGA	1635	0.3859	MTSTRSWLQRLHPQVKTRVGSKKKGENNDNGVNEYSNAPVDEVTKQKVAGAKQYIENHYKEKMKNLQERKERNSLAYDSRTVLEKKVSDADVSEEDQKNLFKFLEKKETEYMRLKRHKMGADDFELLTMIGRGAFGEVRVCREKTSGHVYAMKKLKKSEMLRRRQVEHVISERNLLAEVDSNCIVKLYCSFQDDDYLYLIMEYVPGGDMMTLLMRKNTLTEDEARFYVGEIVLAIESIHKRNYIHRDIKPDNLLLDRYGHLKLSDFGLCKPLDCRTLEEKDFSMGQSVNGSRFTQNDEHAAPKRTQQEQLQHWQQNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPITTCRKIVNWESHLKFPVEAMLSLEAKDLISKLLCNVNQRLGSKGADEIKAHAFFEGVEWNKLYQMEAAFIPEVKDELDTQNFEDFEDLLHLQSNNQTKTAARTGPCRKILSSKDLNFVGYTYKNFEIVNDYQVPGTKTTPEVPEVSDTSSPSNKSPKGSFLKLLPPQLEVSKIL	544

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal13g1042	544	SMART	pkinase_C_6	425	494	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Lal13g1042	544	SUPERFAMILY	Protein kinase-like (PK-like)	99	465	IPR011009	-
	Lal13g1042	544	ProSiteProfiles	AGC-kinase C-terminal domain profile.	425	502	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Lal13g1042	544	MobiDBLite	consensus disorder prediction	1	40	-	-
	Lal13g1042	544	PANTHER	SERINE/THREONINE-PROTEIN KINASE	34	505	-	-
	Lal13g1042	544	SMART	serkin_6	124	424	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal13g1042	544	MobiDBLite	consensus disorder prediction	506	531	-	-
	Lal13g1042	544	MobiDBLite	consensus disorder prediction	286	308	-	-
	Lal13g1042	544	Gene3D	Phosphorylase Kinase; domain 1	79	207	-	-
	Lal13g1042	544	Pfam	Protein kinase domain	125	424	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal13g1042	544	Pfam	Protein kinase C terminal domain	443	492	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Lal13g1042	544	ProSiteProfiles	Protein kinase domain profile.	124	424	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal13g1042	544	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	243	255	IPR008271	GO:0004672\|GO:0006468
	Lal13g1042	544	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	34	505	-	-
	Lal13g1042	544	MobiDBLite	consensus disorder prediction	506	527	-	-
	Lal13g1042	544	CDD	STKc_NDR_like	122	493	-	-
	Lal13g1042	544	Gene3D	Transferase(Phosphotransferase) domain 1	208	281	-	-
	Lal13g1042	544	Gene3D	Transferase(Phosphotransferase) domain 1	318	444	-	-
	Lal13g1042	544	ProSitePatterns	Protein kinases ATP-binding region signature.	130	153	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal13g1042	Lal-Chr13	7688850	7700635	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal13g1042	1	505	AGC Kinase Gene Family	AT1G03920	70.286	0.0	760

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Lal13g1042		Pkinase	3.3e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal13g1042	K08790		-	gmx:100820558	846.654

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal12g0848	12	6942433	6953874	Lal13g1042	13	7688850	7700635	LSH
	Lal13g1042	13	7688850	7700635	Lal1g1882	1	21114044	21119653	PCT