Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1040 ATGGCGAAAGAAAGAGAAAGTGAGAATGGAATTATAGTTAAAGCGATGCAATTCAGTTACGAATACTCAGAAAAAGAACCACCATTGTTTACAGATTTCAACCTTAACGTATCTCCTGGATCACGGTGCCTTCTGTTAGGTGCTAATGGATCTGGGAAAACCACATTGCTTAAGATTCTAGCTGGTAAACACATGGTTGGAGGAAGAGACGTGGTTCGTGTTTTGAATGGTTCCGCTTTTCATGATACTAAACTTGTTTGTAGTGGTGATCTCGCTTATTTGGGTGGATCATGGTCCAAAAACGTTTCCTCCGCTGGAGATATTCCGCTACAAGGAGACTTCTCTGCTGAACATATGATATTTGGAGTTGAGGGCACTGATCCTGACAGGAGAGACAAGTTGATCGATCTGCTTGATATAGATCTGAACTGGCGGATGCATAAGGTATCTGATGGGCAACGACGTCGAGTCCAAATTTGTCTTGGTCTTCTTCATCCATATAAGGTTCTCTTGTTAGATGAGGTTACTGTTGACCTGGATGTTGTTACTAGGATGGATCTATTGGACTTCTTCAGGGAAGAATGTGAACAGAGAGAATCTACAATTGTATATGCAACTCACATTTTTGATGGACTGGAGACATGGGCAACTCATCTGGCATACATACAAGAGGGTGAGCTGAGGAGAGCTGAAAAACTATCAGATGTTAGCGAATTGAAGTCTTCGACTAATCTTCTATCTATTGTTGAGTCCTGGCTCCGAGCTGAAACAAAGCTCGAAAAGAAGAAGCCTGTCCACAACGATTCCCACACCCAAAACACTTCTTTTGTTAGCTCTCCTTTCTTTTCATCTAGACACATGGCATACTATCGATAG 876 0.4201 MAKERESENGIIVKAMQFSYEYSEKEPPLFTDFNLNVSPGSRCLLLGANGSGKTTLLKILAGKHMVGGRDVVRVLNGSAFHDTKLVCSGDLAYLGGSWSKNVSSAGDIPLQGDFSAEHMIFGVEGTDPDRRDKLIDLLDIDLNWRMHKVSDGQRRRVQICLGLLHPYKVLLLDEVTVDLDVVTRMDLLDFFREECEQRESTIVYATHIFDGLETWATHLAYIQEGELRRAEKLSDVSELKSSTNLLSIVESWLRAETKLEKKKPVHNDSHTQNTSFVSSPFFSSRHMAYYR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1040 291 PANTHER ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED 8 291 - -
Lal13g1040 291 Pfam ABC transporter 32 176 IPR003439 GO:0005524
Lal13g1040 291 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 13 249 IPR003439 GO:0005524
Lal13g1040 291 PANTHER ABC TRANSPORTER I FAMILY MEMBER 21 8 291 - -
Lal13g1040 291 SMART AAA_5 39 243 IPR003593 -
Lal13g1040 291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 238 IPR027417 -
Lal13g1040 291 Gene3D - 10 271 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1040 Lal-Chr13 7684761 7687587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1040 13 203 Calmodulin-binding Proteins AT2G36910 21.782 1.47e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1040 K12608 - gmx:100788503 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1040 13 7684761 7687587 Lal13g1040 13 7684761 7687587 ECH
Lal12g0590 12 4254730 4258067 Lal13g1040 13 7684761 7687587 LSH