Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1039 ATGGAGGAAGAGCAGGATCGAATTTTGCTCAACACTTTGGGCGTCAAATCTGCGAATCCTGAAGACATTGAACGTCACATCATACAAAAGGCAAGGAATGATGTGGTGACGGACACTGAAGCGAAAGGAAGCACCGATGAAGAAAATCACCATGTGTCTGAAAATGTTGATCTTTCATCTTCTTCCAAAGCAGAAGAACTTCATCAGAAGTTGAGGGCAGTAGAATTTGAAATTGGCGCAGTTGCTTCCACTATTGAAGATGTCAAAAATAATGGAGACTCTAGTGGTGTTGGTGAGGATGGACAGGAGCAAGGGATTGCAGCGGGGGATGATTCATCTGATGCTTCGGATCTTCAGCGTGTTCTTGCTGCAGATAGGCTAAGAAGCCTGAAGAACACGAAGGCTCAACTAGAGAAAGAGCTTTCAAAGTTGGGTAAAGATAACAACTCCAAGAGTACTGAACGTGAAAAACTGATATTTGATTTGGTAAAGGAAGAGAGAACATCAAAGAGGAAACTTAAGGAAAAAGATAAAAAATTACAGAAAAACTCTGGAAAGAAGCTTAAGACGGTCTCATTTAATGACGATGTTGATTTTGATGCTGTTTTGGATGCAGCCTCTGCAGGTCTTGTTGAAACAGAAAGGGATGAATTGGTCAGAAAAGGAATTTTAACCCCTTTTCATAAGTTGAAAGGCTTCGAGCGCCGCTTTCAACAACCTGAAACATCAAGTAGTCATAATGCTGCTGAGGATGAAAGTGCCACTGGTCTTGTTTCTGCCAGTGTTGAAAGAATTGCCAGATCAATATCTGAAGCAGCGAGAGCTCGCCCAACCACCAAGCTGCTCGATTCTGAGGATTTACCAAAGCTTGAGGCACCTACTATTCCTTTTCAGAGGCTCAGGAGACCACTAAAAGTTCCCAAATCTCTAGATATGGAAGTGGAGAAGAATAAAGATTCAAAAAAGAAAAAGAGGCGGCCCTTGCCTGGTAGGAAATGGACCAAGCGTGTTTCAAGCGAGGATACACATCTGGAAGAACGTGAAAATGCAAATGATGGTTTGGACACTTCCAGTTGTGAAAATTTAGAGGCACAAGATGTTGAACTTGCTGATCATGATTCTTCTTATATAATATTAGAAGGTGGGCTGAAAATCCCTGATAAAATATTTGAAGCTCTATTTGACTATCAAAAGGTTGGAGTTCAATGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACTGTCCAGGTCTTATCTTTTCTTGGTGCTTTGCATTTCAGTGGCATGTACAAACCCAGTATTATTGTGTGTCCTGTTACACTCTTGAGACAATGGAAAAGGGAAGCTAATAAGTGGTACCCAAAATTCCATGTAGAGCTTTTACATGATTCTGCTCAGGATTCTGCTCCTAGAAAGAAGCTAGCTAAATCTGATGAAACAAAAGATGACAGTGATAGTTCAAATGACAATGATTATGAGAGAATTTTACCAACTAAAGGCACAAGAAAATGGGAATCCCTGATAAATTGTGTCGTGGGATCAGAATCCGGATTACTTATTACGACTTATGAGCAGTTAAGAATATTGGGGGACCAGTTGCTTGACATTGAGTGGGGCTATGCAGTTCTTGATGAAGGGCATAGAATAAGGAATCCAAATGCTGAAGTTACCCTAGTATGCAAACAGTTACAAACTATACACCGCATAATAATGACCGGTGCACCCATTCAGAACAAACTGAGTGAACTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCCACAGCATACAGATGTGCTGTGGTGTTGCGTGATTTAATAATGCCTTATCTTCTTCGACGCATGAAGGCGGATGTGAATGCCCAACTTCCAAAGAAAACTGAGCATGTTCTGTTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTACAGAGCATTTTTAGCAAGCACTGACGTGGAGGAAATATTGGATGGACAAAGGAATTCTCTTTCTGGAATTGATGTGATGCGCAAAATTTGCAACCACCCTGACCTACTTGAAAGGGAACATGCCTCCAGTGATCCAGATTATGGAAATCCAGAACGCAGTGGAAAAATGAAAGTTGTAGCTCAAGTCCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTTCTTTTTACTCAAACCCAGCAAATGCTTGATATTTTTGAGAATTTTATGACAGCCTCTGGTCATATTTACCGCAGAATGGATGGTCTCACTCCCGTACGACAGAGAATGGCTTTGATAGATGAATTTAATGTCTCAACTGAAATATTTATTTTCATTTTAACGACCAAGGTTGGGGGTTTGGGGACAAATCTTACTGGTGCTGACAGGGTGATCATCTTTGACCCTGATTGGAATCCTTCAACTGATATGCAGGCTAGAGAGCGGGCTTGGCGTATAGGTCAGAAACGGGATGTAACAGTTTATAGGCTGATCACACGTGGTACTATAGAGGAAAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAGCAGAAAAGATTTTTTAAAGCCCGGGATATGAAAGATCTTTTTGTATTGAACTTGGATGGAGAAACTGGATCAACTGAAACATCGAATATTTTCAGTCAAATATCTGAAGAAGTAAATATTGTCAGGACAACTGAAGATAATCCCGATAAGCATATACATAACCAAACTTCTGAATCAGGTTATGAGGATGTAGCTGGTAATGACAGTAAGTCACAGGGAGGAAGGGGAAAAGAGAAAGTTGAACAGAGTGGTGGAGTTGATGACGAAACAAATATCCTGAAATGTCTGTTTGAAGCTAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCCATGATGAAGAGAAGATGAGACTCGAGGAGCAAGCTTCCCAGGTTGCAAAAAGAGCTGCAGAAGCTTTACGCCAGTCACGAATGCTCCGAAGCCATGATAGTGTATCTGTCCCAACATGGACAGGAAGGTCAGGTGCTGCTGGTGCACCGACATCTGTTCGGCGGAAGTTTGGTTCAACTTTGAACCCCCAGGTGGCAAATAACGTCAAAGCATCTGACGAGTTATCCAGCAATGGAACTAACAAAATCAACGGATTTGCTGCTGGAGCATCTTCCGGTAAGGCCTTATCTTCTGCTGAACTTTTGGCTCGAATTAAAGGTAACCAAGAAAAGGCCATAGGTGCTGGGCTTGAACATCAGTTTGGTATGATGTCAAGTTCCACAAACCAAGCAAGGTCTTCTAGGACTTCTGAAAATTCATCAGGATTTCAACCTGAAGTATTGATTCGAAAACTATGTACCTTCCTACAACAGCAAGGTGGAAGTTCCAATTCAGCCAGCATAGTTGAGTATTTCAAGGACAGGGTACCCTCAAAAGATCTTGCCTTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGCATAAAGGACCAAATGGGTCGCATTGGGTTCTGAAGGCAGACTATCAATTATAG 3645 0.414 MEEEQDRILLNTLGVKSANPEDIERHIIQKARNDVVTDTEAKGSTDEENHHVSENVDLSSSSKAEELHQKLRAVEFEIGAVASTIEDVKNNGDSSGVGEDGQEQGIAAGDDSSDASDLQRVLAADRLRSLKNTKAQLEKELSKLGKDNNSKSTEREKLIFDLVKEERTSKRKLKEKDKKLQKNSGKKLKTVSFNDDVDFDAVLDAASAGLVETERDELVRKGILTPFHKLKGFERRFQQPETSSSHNAAEDESATGLVSASVERIARSISEAARARPTTKLLDSEDLPKLEAPTIPFQRLRRPLKVPKSLDMEVEKNKDSKKKKRRPLPGRKWTKRVSSEDTHLEERENANDGLDTSSCENLEAQDVELADHDSSYIILEGGLKIPDKIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREANKWYPKFHVELLHDSAQDSAPRKKLAKSDETKDDSDSSNDNDYERILPTKGTRKWESLINCVVGSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTIHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTDVEEILDGQRNSLSGIDVMRKICNHPDLLEREHASSDPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFENFMTASGHIYRRMDGLTPVRQRMALIDEFNVSTEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNLDGETGSTETSNIFSQISEEVNIVRTTEDNPDKHIHNQTSESGYEDVAGNDSKSQGGRGKEKVEQSGGVDDETNILKCLFEANGIHSAMNHDLIMNAHDEEKMRLEEQASQVAKRAAEALRQSRMLRSHDSVSVPTWTGRSGAAGAPTSVRRKFGSTLNPQVANNVKASDELSSNGTNKINGFAAGASSGKALSSAELLARIKGNQEKAIGAGLEHQFGMMSSSTNQARSSRTSENSSGFQPEVLIRKLCTFLQQQGGSSNSASIVEYFKDRVPSKDLALFKNLLKEIATLHKGPNGSHWVLKADYQL 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1039 1214 Coils Coil 120 154 - -
Lal13g1039 1214 MobiDBLite consensus disorder prediction 308 358 - -
Lal13g1039 1214 MobiDBLite consensus disorder prediction 34 54 - -
Lal13g1039 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 914 IPR027417 -
Lal13g1039 1214 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 741 900 IPR001650 -
Lal13g1039 1214 Gene3D - 660 952 IPR027417 -
Lal13g1039 1214 Pfam SNF2-related domain 396 718 IPR000330 GO:0005524|GO:0140658
Lal13g1039 1214 CDD DEXHc_ERCC6 393 603 - -
Lal13g1039 1214 MobiDBLite consensus disorder prediction 34 63 - -
Lal13g1039 1214 SMART ultradead3 389 612 IPR014001 -
Lal13g1039 1214 MobiDBLite consensus disorder prediction 933 974 - -
Lal13g1039 1214 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 604 IPR014001 -
Lal13g1039 1214 Coils Coil 1001 1028 - -
Lal13g1039 1214 PANTHER SNF2/RAD54 FAMILY MEMBER 250 1105 - -
Lal13g1039 1214 Pfam Helicase conserved C-terminal domain 743 850 IPR001650 -
Lal13g1039 1214 MobiDBLite consensus disorder prediction 333 353 - -
Lal13g1039 1214 CDD SF2_C_SNF 736 861 - -
Lal13g1039 1214 MobiDBLite consensus disorder prediction 480 505 - -
Lal13g1039 1214 Coils Coil 163 183 - -
Lal13g1039 1214 MobiDBLite consensus disorder prediction 87 115 - -
Lal13g1039 1214 MobiDBLite consensus disorder prediction 237 257 - -
Lal13g1039 1214 Gene3D - 363 653 IPR038718 -
Lal13g1039 1214 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 250 1105 - -
Lal13g1039 1214 MobiDBLite consensus disorder prediction 237 254 - -
Lal13g1039 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 654 IPR027417 -
Lal13g1039 1214 SMART helicmild6 767 850 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1039 Lal-Chr13 7671896 7682442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1039 757 891 RAD5 or RAD16-like Gene Family AT5G05130 39.416 3.79e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal13g1039 SNF2_N 4.1e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1039 K10841 - gmx:100820025 1879.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1039 13 7671896 7682442 Lal13g1039 13 7671896 7682442 ECH