Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1034 ATGGGTCTTAGAGACATTAGTGCTTCACTTCCTCCTGGGTTTCGGTTTTATCCAAGTGATGAGGAATTGGTCCTTCATTATCTTTACAAAAAGATCACAAATGAGGAAGTTATGAAGGGTACTTTGGTTGAAATTGATTTGCACACATGCGAGCCATGGCAACTTCCTGAGGTGGCGAAGCTGAATGCAACAGAATGGTACTTCTTCAGCTTCCGCGACCGTAAATATGCAACTGGATATCGAACCAATCGAGCAACGACATCTGGCTATTGGAAAGCAACAGGGAAAGATCGAACAGTGGTAGATCCAATCACACACGAGGTTGTAGGGATGAGGAAGACATTGGTGTTCTATAGGAATAGAGCTCCAAATGGAATCAAATCGAATTGGATCATGCATGAATTTCGCTTGGAGACCCCACATATGCCCCCTAAGGAAGACTGGGTTTTATGTAGAGTGTTTCACAAAGGAAAAGAAGACAACAATGCCAAACTTAGCCCACAACTCATGTTTGATGCTATAGCAACATCCTCAACAAACCAAACCATCCCTGTTGGGTATAACCAACTTGCTTATTTCCCTTCCTCAACACCAAATAACCTTCATCATCAAAACCTAAACCAAAACAATTCATTGATGAATCTCCTTAACTATTCTCATGACACAAACACAAATTGTAGTGCCGTTACTCAAATTAGTCCAAAAGGTGATGATGGGTATGGGTTCTTATGGGATATGGATATTGAAGAAAATAGCTTCCAAGATGGTGTGGCATCAAATTTGGATGGAATAAGATTCGAGGTTGATAATAATAGTATGGTGTCGTTATAA 831 0.4055 MGLRDISASLPPGFRFYPSDEELVLHYLYKKITNEEVMKGTLVEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRTVVDPITHEVVGMRKTLVFYRNRAPNGIKSNWIMHEFRLETPHMPPKEDWVLCRVFHKGKEDNNAKLSPQLMFDAIATSSTNQTIPVGYNQLAYFPSSTPNNLHHQNLNQNNSLMNLLNYSHDTNTNCSAVTQISPKGDDGYGFLWDMDIEENSFQDGVASNLDGIRFEVDNNSMVSL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1034 276 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Lal13g1034 276 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 271 - -
Lal13g1034 276 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Lal13g1034 276 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Lal13g1034 276 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 271 - -
Lal13g1034 276 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1034 Lal-Chr13 7597389 7602553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1034 6 225 NAC Transcription Factor Family AT1G56010 46.491 1.33e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal13g1034 NAM 1.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1034 - - ccaj:109788642 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1034 13 7597389 7602553 Lal13g1034 13 7597389 7602553 ECH
Lal13g1034 13 7597389 7602553 Lal24g0787 24 6149528 6155735 LSH