Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1031 AATTTGGAAGAAACTAATGAAATTGTGAATCTTGTCTGCAATTTACGCGATTACATGATGAAAACTGAGTACACTGAAGTTAAAAGTGGTGATTCAGTCCCTTCATACTTCCGCTGTTCCTTATCATTAGAACTCATGTTGGATCCTGTTATCGCGGCCTCAGTAGCAATTCCATTTCAAACTGGAAATGCATTTGATAAGCAAATGGATGATAACTCATTTAGATTAAGTGATGATGAACACAATGGATGCCGAAATGGAGCAACAGAGAAGTTTGAGCAGCAATCCCCATATATTCACAGCAGAAGTGAATCCTTTTCAAGTACAATTTCTAGTACTGATTGTTTACTTCCAGTTTCAAAAGATGTGTCACAGATATCCAATCAGCACCCAAGCGCGAGGGCGTTTTCTATCTCCGGATCGGATGAATTGGCCACTGCTTCTCATGTCAATACATTGATTGAAGACCTTCGAGGCCAATCAAATGAAGTGCAAACTACTGCTGCAGAAGAATTGAGGCTTCTTACAAAGCATAACATGGAAAACTTGGGAGCCATAAAACCAATTATCTATGTTTTGAAGACAGGAAATGATGGTGCCAAGGAAAACTCTGCAGCAGCTCTATTCAGCCTTTCTGTAATAGAAAACAATAAGGCAAAAATTGGCCAATCTGCTCGCATAGTTCAAGCTGGAGCTGTGAAATTTCTGGTTCAGATGATGGAACATGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTCTATCAAACCTGTCAACAATTTCAGAGGGCCGGCACAACAGCTCCTCAGCCATTTTCGGAATCATGAGGATAGACAATTTTGGTTATTTCATTACCCTTTTTTCTTGCATTAGTAACTTGTGGTATTCATATTTCTCCATGTTCCATTGTTGCCATGTTGAGGACTTTAGTGCTCCTTTCATTGCATTCTTTTCATTTTTACATGTTACCACTTATGATGCTTTCATTTTTCTCCTACTTCCTGATGGCTTTCTCATTGGTTATTCTCATATTCAAAATGGGATTTCACTGCCACTTTGTCTCATTTCTCCCCCTAACTATTTTCTATTTTTATGCTCTACTTTGTGA 1107 0.3893 NLEETNEIVNLVCNLRDYMMKTEYTEVKSGDSVPSYFRCSLSLELMLDPVIAASVAIPFQTGNAFDKQMDDNSFRLSDDEHNGCRNGATEKFEQQSPYIHSRSESFSSTISSTDCLLPVSKDVSQISNQHPSARAFSISGSDELATASHVNTLIEDLRGQSNEVQTTAAEELRLLTKHNMENLGAIKPIIYVLKTGNDGAKENSAAALFSLSVIENNKAKIGQSARIVQAGAVKFLVQMMEHADGMVDKAVALLSNLSTISEGRHNSSSAIFGIMRIDNFGYFITLFSCISNLWYSYFSMFHCCHVEDFSAPFIAFFSFLHVTTYDAFIFLLLPDGFLIGYSHIQNGISLPLCLISPPNYFLFLCSTL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1031 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 70 IPR013083 -
Lal13g1031 368 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 225 265 - -
Lal13g1031 368 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 113 182 - -
Lal13g1031 368 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 183 225 - -
Lal13g1031 368 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 2 54 - -
Lal13g1031 368 Gene3D - 123 282 IPR011989 -
Lal13g1031 368 SUPERFAMILY ARM repeat 149 296 IPR016024 -
Lal13g1031 368 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 231 265 IPR000225 GO:0005515
Lal13g1031 368 PANTHER U BOX DOMAIN-CONTAINING 113 182 - -
Lal13g1031 368 PANTHER U BOX DOMAIN-CONTAINING 225 265 - -
Lal13g1031 368 PANTHER U BOX DOMAIN-CONTAINING 183 225 - -
Lal13g1031 368 PANTHER U BOX DOMAIN-CONTAINING 2 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1031 Lal-Chr13 7572934 7574515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1031 148 265 U-box Gene Family AT2G23140 36.500 1.89e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1031 - - mtr:MTR_1g069845 161.77