Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1019 ATGGATTTTGATTCTTCTTTCTCATGGGAAGACCTATTTTTCTTCAATGAAGACAACAACACCCTCCCCTTTAATTTCAATAATAACCAACACTCACAAATCAAAGAATCATCTATAGAATCCAACTCTTCAGGATCTATTCTTTGCAGCACTGAATCACAAGAAGTCTCTTCAAATTCAACAACTAATAATGCACAAGTACTCAAAGAAACACATGCTCCATCATATTCATCATCATCACCACCACCACTAAAGGAAAGTAATAAAAACAACAAGGAGAAGAGACCCTTCAGAGGAGTAAGAAGAAGACCATGGGGGAAATTTGCAGCAGAAATAAGAGACTCCACGAGAAATGGGGTTAGAGTTTGGATTGGAACATTTGATACAGCTGAAGAAGCTGCTCTAGCTTATGATCAAGCAGCTTTCTCAACAAGAGGTTCCATGGCAGTGCTCAATTTTCCAGAAGAAGTTGTTAGGGAATCACTCAAAGACATGGCTAACAACAACAACAATAGTAGTAAGCCTTATTTGGAAGATGGATCCTCTCCCGTGTTGGAACTCAAGAGAAAGCACACAATGAGAAGAAAGTCTAAGACCAATGGACCAAACAATAACAAAAAAACCAAAAGGGATGGCACAGAATTAGAGTTACTATCCAAAAATGTGCTGGTGTTTGAGGATTTGGGATCTGATTATCTAGACCAACTTCTGAGTTTGACATCTTCTCAAGGTAGAGAGGGAGGAGAAAAAGGAAAGTGTCCAACTGTGAAAAAGAAAAATGAATGA 786 0.3842 MDFDSSFSWEDLFFFNEDNNTLPFNFNNNQHSQIKESSIESNSSGSILCSTESQEVSSNSTTNNAQVLKETHAPSYSSSSPPPLKESNKNNKEKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEEAALAYDQAAFSTRGSMAVLNFPEEVVRESLKDMANNNNNSSKPYLEDGSSPVLELKRKHTMRRKSKTNGPNNNKKTKRDGTELELLSKNVLVFEDLGSDYLDQLLSLTSSQGREGGEKGKCPTVKKKNE 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1019 261 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 241 - -
Lal13g1019 261 Pfam AP2 domain 97 146 IPR001471 GO:0003700|GO:0006355
Lal13g1019 261 CDD AP2 97 155 IPR001471 GO:0003700|GO:0006355
Lal13g1019 261 MobiDBLite consensus disorder prediction 33 100 - -
Lal13g1019 261 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Lal13g1019 261 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Lal13g1019 261 SUPERFAMILY DNA-binding domain 97 155 IPR016177 GO:0003677
Lal13g1019 261 PANTHER DNA-BINDING DOMAIN 5 241 IPR044808 GO:0003700|GO:0009873
Lal13g1019 261 MobiDBLite consensus disorder prediction 240 261 - -
Lal13g1019 261 ProSiteProfiles AP2/ERF domain profile. 96 154 IPR001471 GO:0003700|GO:0006355
Lal13g1019 261 MobiDBLite consensus disorder prediction 33 86 - -
Lal13g1019 261 Gene3D AP2/ERF domain 96 156 IPR036955 GO:0003700|GO:0006355
Lal13g1019 261 MobiDBLite consensus disorder prediction 165 213 - -
Lal13g1019 261 MobiDBLite consensus disorder prediction 189 203 - -
Lal13g1019 261 SMART rav1_2 96 160 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1019 Lal-Chr13 7500559 7501629 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1019 77 244 AP2-EREBP Transcription Factor Family AT3G23240 55.621 3.48e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal13g1019 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1019 K14516 - gmx:100784784 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1019 13 7500559 7501629 Lal13g1019 13 7500559 7501629 ECH
Lal13g1019 13 7500559 7501629 Lal24g0779 24 6061673 6062824 LSH