Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1018 ATGGAAGGAGAGGGTTCAGTTTCTAATGGAAATAATGGTGATATTCGATATAGAGGGATTAGAAGGAGGCCATGGGGTAAGTTTGCTGCTGAAATTCGTGACCCAACAAGAAAAGGAACAAGATTATGGCTTGGAACCTTTGACACTGCTGAAGATGCTGCACGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAAAGCAATTCTCAACTTCCCAAATGAGTATCAATCTTCTAATCCACACTCTTCATTACCCCTTCCTCTCTCTTCTTCTTCTTCTTCTTCTAATTCCTCTAGTAACTATTCTGTTGCTAATGCTGGTAATGTTTCTGGAGAAATGTTGCAAGGTTATGATACTTTGGAGTTGGAATATTTGGATAATAATTTGCTGGAGGAACTGCTTCAGGCACAACAAGATGAAAGGCAAGTGTAA 438 0.3973 MEGEGSVSNGNNGDIRYRGIRRRPWGKFAAEIRDPTRKGTRLWLGTFDTAEDAARAYDAAAFHFRGHKAILNFPNEYQSSNPHSSLPLPLSSSSSSSNSSSNYSVANAGNVSGEMLQGYDTLELEYLDNNLLEELLQAQQDERQV 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1018 145 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Lal13g1018 145 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Lal13g1018 145 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Lal13g1018 145 PANTHER - 13 137 - -
Lal13g1018 145 MobiDBLite consensus disorder prediction 74 107 - -
Lal13g1018 145 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Lal13g1018 145 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Lal13g1018 145 PANTHER DNA-BINDING DOMAIN 13 137 IPR044808 GO:0003700|GO:0009873
Lal13g1018 145 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Lal13g1018 145 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Lal13g1018 145 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1018 Lal-Chr13 7491916 7492353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1018 11 143 AP2-EREBP Transcription Factor Family AT3G23230 57.143 1.52e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal13g1018 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1018 - - aip:107628225 135.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1018 13 7491916 7492353 Lal13g1018 13 7491916 7492353 ECH
Lal1g1888 1 21159218 21160117 Lal13g1018 13 7491916 7492353 PCT
Lal13g1018 13 7491916 7492353 Lal1g1888 1 21159218 21160117 PCT