Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1017 ATGACTTCCTCTTTCTTTCAGGATCCAGATTGGAACATGTTGCAGATTGATCCTTCAGATATTTTCTACCAATCAATTTCAACAAGCAATGGTGCTGTTCATCACCCTATCAATGATTCTCTTTCCTTTGATAGGGTTGACCTTTCAATGGATTCAAAGTCACCAACCAAAGTGAACAACAACAATCCAAAGAAACTGGTGAAGTCTGAAGTCAAAGAAGTGAAGAATAATGAAGAAAGATCTTATATTGGTGTGAGGAAAAGACCTTGGGGAAAATTTGCAGCAGAAATCAGAGATACAACAAGGAATGGCACAAGGGTTTGGCTTGGAACCTTTGATACTGCAGAAGAAGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGTAAAAATGCTGTACTCAACTTTTCAGTCAAAAGGGTCAAAGAATCTTTGCAAGAGATCCAGTTATATGATTGTAGCACCAAAGGGTGTTCTCCAGCACTTGCACTTAAGGAAAGACACCGCATCCAAAGAAAATTGTCATCATCAAAAGCTAAAAGCAGTGAAAAGTGTAAAGGGAAAGAGCACTTATCAGAAGCACCAAGTGTGATGGAGGTAGAGGACTTAGGGGTTGAATATCTTGAGCACCTTCTAACCATATCAGATCAAAGTGCAAGCCCTAGCTACTTCATGTAA 684 0.3962 MTSSFFQDPDWNMLQIDPSDIFYQSISTSNGAVHHPINDSLSFDRVDLSMDSKSPTKVNNNNPKKLVKSEVKEVKNNEERSYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFDTAEEAALAYDQAAFSMRGKNAVLNFSVKRVKESLQEIQLYDCSTKGCSPALALKERHRIQRKLSSSKAKSSEKCKGKEHLSEAPSVMEVEDLGVEYLEHLLTISDQSASPSYFM 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1017 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 35 216 - -
Lal13g1017 227 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Lal13g1017 227 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Lal13g1017 227 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Lal13g1017 227 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Lal13g1017 227 CDD AP2 82 138 IPR001471 GO:0003700|GO:0006355
Lal13g1017 227 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Lal13g1017 227 PANTHER DNA-BINDING DOMAIN 35 216 IPR044808 GO:0003700|GO:0009873
Lal13g1017 227 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Lal13g1017 227 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1017 Lal-Chr13 7476547 7477230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1017 79 222 AP2-EREBP Transcription Factor Family AT3G23240 57.931 5.59e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal13g1017 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1017 K14516 - gmx:100811486 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1017 13 7476547 7477230 Lal13g1017 13 7476547 7477230 ECH