Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1016 ATGGAAGAGAACTCATCAAAGAAAAAGGGGTCAAAAGAAACTCGATATAGAGGAGTTAGGAGGCGGCCGTGGGGAAAGTTTGCGGCCGAGATTAGGGACTCGGCTAGGCACAGTGCTCGTGTTTGGCTCGGGACATTTTTAACCGCTGAGGAGGCTGCAAGAGCTTATGACCGCGCCGCCTATGAAATGAGAGGTAGTTCAACAATTCTCAACTTTCCACATGAGTATCCTTCATCCAATGTGGGTTCTATTATGAAATTATCGTCATCATCATCACCTTCGGCTCATGCATCCTCATTGGCATCAATGTCATCATGTTCTTCTTCAATGGTTAAAAGTGAGCATGATAAACAAGTGATTGAGTTTGAGTATTTAGATGACAAATTGTTAGAGGAACTTCTTGATTGTGATGAGTATACCATTAAGAAAAATTTGCCTATGTAG 444 0.4234 MEENSSKKKGSKETRYRGVRRRPWGKFAAEIRDSARHSARVWLGTFLTAEEAARAYDRAAYEMRGSSTILNFPHEYPSSNVGSIMKLSSSSSPSAHASSLASMSSCSSSMVKSEHDKQVIEFEYLDDKLLEELLDCDEYTIKKNLPM 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1016 147 Pfam AP2 domain 14 65 IPR001471 GO:0003700|GO:0006355
Lal13g1016 147 CDD AP2 14 74 IPR001471 GO:0003700|GO:0006355
Lal13g1016 147 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Lal13g1016 147 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Lal13g1016 147 PANTHER - 7 135 - -
Lal13g1016 147 SUPERFAMILY DNA-binding domain 15 75 IPR016177 GO:0003677
Lal13g1016 147 PANTHER DNA-BINDING DOMAIN 7 135 IPR044808 GO:0003700|GO:0009873
Lal13g1016 147 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Lal13g1016 147 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Lal13g1016 147 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1016 Lal-Chr13 7471712 7472155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1016 11 138 AP2-EREBP Transcription Factor Family AT3G23230 58.594 1.24e-42 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal13g1016 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1016 - - gmx:100810414 158.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1016 13 7471712 7472155 Lal20g0023 20 183504 184888 PCT